Evidence map›Paper›PMID 22082563›Full record

ArticleBioorganic & medicinal chemistry letters2012

A key cytochrome P450 hydroxylase in pradimicin biosynthesis.

Kandy L Napan, Jia Zeng, Jon Y Takemoto, Jixun Zhan

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Synergistic actions of tailoring enzymes in pradimicin biosynthesis.Chembiochem : a European journal of chemical biology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kandy L NapanDepartment of Biological Engineering, Utah State University, 4105 Old Main Hill, Logan, UT 84322, United States.
Jia Zeng
Jon Y Takemoto
Jixun Zhan
Utah State University · US

Funding

Chemoenzymatic synthesis of pradimicin analogues for novel antifungal and antivirR15AI089347 · NIAID · UTAH STATE UNIVERSITY · PI ZHAN, JIXUN · 2011 to 2011
$422k
NIAID NIH HHS R15 AI089347NIAID NIH HHS R15AI089347
6 · The paper itself

Abstract

Pradimicins A-C (1-3) are a group of antifungal and antiviral polyketides from Actinomadura hibisca. The sugar moieties in pradimicins are required for their biological activities. Consequently, the 5-OH that is used for glycosylation plays a critical role in pradimicin biosynthesis. A cytochrome P450 monooxygenase gene, pdmJ, was amplified from the genomic DNA of A. hibisca and expressed in Escherichia coli BL21(DE3). PdmJ introduced a hydroxyl group to G-2A (4), a key pradimicin biosynthetic intermediate, at C-5 to form JX134 (5). A d-Ala-containing pradimicin analog, JX137a (6) was tested as an alternative substrate, but no product was detected by LC-MS, indicating that PdmJ has strict substrate specificity. Kinetic studies revealed a typical substrate inhibition of PdmJ activity. The optimal substrate concentration for the highest velocity is 115μM under the test conditions. Moreover, the conversion rate of 4 to 5 was reduced by the presence of 6, likely due to competitive inhibition. Coexpression of PdmJ and a glucose 1-dehydrogenase in E. coli BL21(DE3) provides an efficient method to produce the important intermediate 5 from 4.

Indexed as

Amino Acid SequenceAnthracyclinesChemistry, PharmaceuticalChromatography, High Pressure LiquidChromatography, LiquidCytochrome P-450 Enzyme SystemDose-Response Relationship, DrugDrug DesignEscherichia coliKineticsMass SpectrometryModels, ChemicalMolecular Sequence DataPolyketidesPradimicins and BenanomicinsSequence Homology, Amino AcidAnthracyclinesCytochrome P-450 Enzyme SystemPolyketidespradimicin APradimicins and Benanomicins

Identifiers

PMID22082563
PMCPMC3248948
OpenAlexW2001312915

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.