Evidence map›Paper›PMID 22081607›Full record

ArticleThe Journal of biological chemistry2012

DHHC5 protein palmitoylates flotillin-2 and is rapidly degraded on induction of neuronal differentiation in cultured cells.

Yi Li, Brent R Martin, Benjamin F Cravatt, Sandra L Hofmann

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 147 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Stearoylation cycle regulates the cell surface distribution of the PCP protein Vangl2.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Mechanisms and functions of protein S-acylation.Nature reviews. Molecular cell biology · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Quantification of Protein Palmitoylation by Cysteine-SILAC.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yi LiHamon Center for Therapeutic Oncology Research and Department of Internal Medicine, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-8593.
Brent R MartinSkaggs Institute of Chemical Biology and Department of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037.
Benjamin F CravattSkaggs Institute of Chemical Biology and Department of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037.
Sandra L HofmannHamon Center for Therapeutic Oncology Research and Department of Internal Medicine, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-8593. Electronic address: sandra.hofmann@utsouthwestern.edu.
Scripps Research Institute · USThe University of Texas Southwestern Medical Center · US

Funding

Chemical Approaches for Activity-Based ProteomicsR37CA087660 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2009 to 2018
$3.1M
Molecular Basis of Infantile NCLR37NS036867 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI HOFMANN, SANDRA L · 2004 to 2010
$2.5M
Quantitative chemical proteomics of dynamic palmitoylation in cellsK99CA151460 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI MARTIN, BRENT RANDALL · 2010 to 2010
$81k
NCI NIH HHS K99 CA151460NCI NIH HHS K99CA151460NCI NIH HHS R37 CA087660NINDS NIH HHS R37 NS036867NINDS NIH HHS R37 NS36867
6 · The paper itself

Abstract

Post-translational palmitoylation of intracellular proteins is mediated by protein palmitoyltransferases belonging to the DHHC family, which share a common catalytic Asp-His-His-Cys (DHHC) motif. Several members have been implicated in neuronal development, neurotransmission, and synaptic plasticity. We previously observed that mice homozygous for a hypomorphic allele of the ZDHHC5 gene are impaired in context-dependent learning and memory. To identify potentially relevant protein substrates of DHHC5, we performed a quantitative proteomic analysis of stable isotope-labeled neuronal stem cell cultures from forebrains of normal and DHHC5-GT (gene-trapped) mice using the bioorthogonal palmitate analog 17-octadecynoic acid. We identified ∼300 17-octadecynoic acid-modified and hydroxylamine-sensitive proteins, of which a subset was decreased in abundance in DHHC5-GT cells. Palmitoylation and oligomerization of one of these proteins (flotillin-2) was abolished in DHHC5-GT neuronal stem cells. In COS-1 cells, overexpression of DHHC5 markedly stimulated the palmitoylation of flotillin-2, strongly suggesting a direct enzyme-substrate relationship. Serendipitously, we found that down-regulation of DHHC5 was triggered within minutes following growth factor withdrawal from normal neural stem cells, a maneuver that is used to induce neural differentiation in culture. The effect was reversible for up to 4 h, and degradation was partially prevented by inhibitors of ubiquitin-mediated proteolysis. These findings suggest that protein palmitoylation can be regulated through changes in DHHC PAT levels in response to differentiation signals.

Indexed as

Cell DifferentiationLipoylationProteolysisAcyltransferasesAnimalsCells, CulturedHumansMembrane ProteinsMiceMutagenesis, Site-DirectedMutationNeural Stem CellsNeuronsProtein MultimerizationProtein Structure, QuaternaryAcyltransferasesDHHC5 protein, mouseflotillinsMembrane Proteins

Identifiers

PMID22081607
PMCPMC3249106
OpenAlexW2050419119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.