Evidence map›Paper›PMID 22081604›Full record

ArticleThe Journal of biological chemistry2012

Low resolution structure and dynamics of a colicin-receptor complex determined by neutron scattering.

Luke A Clifton, Christopher L Johnson, Alexandra S Solovyova, Phil Callow, Kevin L Weiss, Helen Ridley, Anton P Le Brun, Christian J Kinane, John R P Webster, Stephen A Holt and 1 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  13. Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Article
  15. An Accurate In Vitro Model of theAngewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2015
    Article
  16. An accurate in vitro model of the E. coli envelope.Angewandte Chemie (International ed. in English) · 2015
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Luke A CliftonISIS Spallation Neutron Source, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0QX, United Kingdom.
Christopher L JohnsonInstitute for Cell and Molecular Biosciences, The Medical School, University of Newcastle, Framlington Place, Newcastle-upon-Tyne NE2 4HH, United Kingdom.
Alexandra S SolovyovaInstitute for Cell and Molecular Biosciences, The Medical School, University of Newcastle, Framlington Place, Newcastle-upon-Tyne NE2 4HH, United Kingdom.
Phil CallowPartnership for Structural Biology, Institut Laue Langevin, 6 Rue Jules Horowitz, 38042 Grenoble, France.
Kevin L WeissCenter for Structural Molecular Biology, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831.
Helen RidleyInstitute for Cell and Molecular Biosciences, The Medical School, University of Newcastle, Framlington Place, Newcastle-upon-Tyne NE2 4HH, United Kingdom.
Anton P Le BrunInstitute for Cell and Molecular Biosciences, The Medical School, University of Newcastle, Framlington Place, Newcastle-upon-Tyne NE2 4HH, United Kingdom.
Christian J KinaneISIS Spallation Neutron Source, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0QX, United Kingdom.
John R P WebsterISIS Spallation Neutron Source, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0QX, United Kingdom.
Stephen A HoltISIS Spallation Neutron Source, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0QX, United Kingdom.
Jeremy H LakeyInstitute for Cell and Molecular Biosciences, The Medical School, University of Newcastle, Framlington Place, Newcastle-upon-Tyne NE2 4HH, United Kingdom. Electronic address: Jeremy.Lakey@ncl.ac.uk.

Funding

Wellcome TrustWellcome Trust 080342
6 · The paper itself

Abstract

Proteins that translocate across cell membranes need to overcome a significant hydrophobic barrier. This is usually accomplished via specialized protein complexes, which provide a polar transmembrane pore. Exceptions to this include bacterial toxins, which insert into and cross the lipid bilayer itself. We are studying the mechanism by which large antibacterial proteins enter Escherichia coli via specific outer membrane proteins. Here we describe the use of neutron scattering to investigate the interaction of colicin N with its outer membrane receptor protein OmpF. The positions of lipids, colicin N, and OmpF were separately resolved within complex structures by the use of selective deuteration. Neutron reflectivity showed, in real time, that OmpF mediates the insertion of colicin N into lipid monolayers. This data were complemented by Brewster Angle Microscopy images, which showed a lateral association of OmpF in the presence of colicin N. Small angle neutron scattering experiments then defined the three-dimensional structure of the colicin N-OmpF complex. This revealed that colicin N unfolds and binds to the OmpF-lipid interface. The implications of this unfolding step for colicin translocation across membranes are discussed.

Indexed as

Neutron DiffractionColicinsDetergentsEscherichia coliEscherichia coli ProteinsModels, MolecularPhosphatidylglycerolsPorinsProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryProtein TransportScattering, Small AngleSurface PropertiesTime Factors1,2-dipalmitoylphosphatidylglycerolColicinsDetergentsEscherichia coli ProteinsOmpF proteinPhosphatidylglycerolsPorins

Identifiers

PMID22081604
PMCPMC3249085

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.