Evidence map›Paper›PMID 22080921›Full record

ArticleNature immunology2011

Harnessing of the nucleosome-remodeling-deacetylase complex controls lymphocyte development and prevents leukemogenesis.

Jiangwen Zhang, Audrey F Jackson, Taku Naito, Marei Dose, John Seavitt, Feifei Liu, Elizabeth J Heller, Mariko Kashiwagi, Toshimi Yoshida, Fotini Gounari and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
17.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 182 citations in OpenAlex.

  1. Trial
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  8. Review
  9. Article
  10. Stabilization of β-Catenin Directs HEB to Limit Thymic Selection.Journal of immunology (Baltimore, Md. : 1950) · 2024
    Article
  11. Article
  12. Biomedicines · 2024
    Review
  13. Review
  14. IKAROS Family Transcription Factors in Lymphocyte Differentiation and Function.Advances in experimental medicine and biology · 2024
    Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Interactome of Aiolos/Ikaros Reveals Combination Rationale of Cereblon Modulators with HDAC Inhibitors in DLBCL.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Jiangwen Zhang *FAS Research Computing, Harvard University, Cambridge, MA 02138, USA.
Audrey F Jackson *CBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Taku Naito *CBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Marei DoseDepartment of Medicine, The University of Chicago, Chicago, IL 60637, USA.
John SeavittCBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Feifei LiuCBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Elizabeth J HellerCBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Mariko KashiwagiCBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Toshimi YoshidaCBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Fotini GounariDepartment of Medicine, The University of Chicago, Chicago, IL 60637, USA.
Howard T PetrieDepartment of Cancer Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Katia GeorgopoulosCBRC, Mass General Hospital, Harvard Medical School, Charlestown, MA, 02129, USA.
Massachusetts General Hospital · USHarvard University · USUniversity of Chicago · USScripps Research Institute · US

Funding

TRAINING IN TRANSPLANTATION BIOLOGYT32AI007529 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI MADSEN, JOREN C · 1998 to 2024
$6.4M
Ikaros and Mi-2 beta interactions in early lymphoid developmentR01AI042254 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI GEORGOPOULOS, KATIA · 1998 to 2013
$5.3M
Ikaros regulation: study on hemo-lymphopoiesisR37AI033062 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI GEORGOPOULOS, KATIA · 2002 to 2011
$3.5M
Ikaros-based epigenetic regulation of T cell leukemogenesisR01CA158006 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GEORGOPOULOS, KATIA · 2012 to 2016
$2.0M
Ikaros regulation: study on hemo-lymphopoiesisR01CA162092 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GEORGOPOULOS, KATIA · 2011 to 2015
$1.8M
NCI NIH HHS R01 CA158006NCI NIH HHS R01CA158006NCI NIH HHS R01 CA162092NIAID NIH HHS 2T32AI007529NIAID NIH HHS 5R01AI042254NIAID NIH HHS R01 AI042254NIAID NIH HHS R37 AI033062NIAID NIH HHS T32 AI007529
6 · The paper itself

Abstract

Cell fate depends on the interplay between chromatin regulators and transcription factors. Here we show that activity of the Mi-2β nucleosome-remodeling and histone-deacetylase (NuRD) complex was controlled by the Ikaros family of lymphoid lineage-determining proteins. Ikaros, an integral component of the NuRD complex in lymphocytes, tethered this complex to active genes encoding molecules involved in lymphoid differentiation. Loss of Ikaros DNA-binding activity caused a local increase in chromatin remodeling and histone deacetylation and suppression of lymphoid cell-specific gene expression. Without Ikaros, the NuRD complex also redistributed to transcriptionally poised genes that were not targets of Ikaros (encoding molecules involved in proliferation and metabolism), which induced their reactivation. Thus, release of NuRD from Ikaros regulation blocks lymphocyte maturation and mediates progression to a leukemic state by engaging functionally opposing epigenetic and genetic networks.

Indexed as

AnimalsBase SequenceCell DifferentiationChromatin Assembly and DisassemblyGene Expression ProfilingGene Regulatory NetworksIkaros Transcription FactorLeukemiaLymphocytesMi-2 Nucleosome Remodeling and Deacetylase ComplexMiceNucleotide MotifsProtein BindingThymocytesIkaros Transcription FactorMi-2 Nucleosome Remodeling and Deacetylase Complex

Identifiers

PMID22080921
PMCPMC3868219
OpenAlexW2158136052

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.