Evidence map›Paper›PMID 22080861›Full record

ArticleThe Journal of clinical investigation2011

Unraveling the functional implications of GWAS: how T cell protein tyrosine phosphatase drives autoimmune disease.

Julie Zikherman, Arthur Weiss

Open access · bronzeAbstract readComment
In one paragraph

Article in The Journal of clinical investigation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Modulation ofInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Double-negative T cells remarkably promote neuroinflammation after ischemic stroke.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
  14. Role ofWorld journal of gastroenterology · 2018
    Article
  15. Article
  16. Article
  17. Review
  18. Can rheumatoid arthritis be prevented?Best practice & research. Clinical rheumatology · 2013
    Review
  19. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Julie ZikhermanDivision of Rheumatology, Rosalind Russell Medical Research Center for Arthritis, Department of Medicine, UCSF, San Francisco, California, USA.
Arthur Weiss
Center for Rheumatology · US

Funding

Titrating CD45 expression in mice to study development of T cell toleranceK08AR059723 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZIKHERMAN, JULIE · 2010 to 2014
$598k
Howard Hughes Medical InstituteNIAMS NIH HHS K08 AR059723
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified a large number of SNPs that are linked to human autoimmune diseases. However, the functional consequences of most of these genetic variations remain undefined. T cell protein tyrosine phosphatase (TCPTP, which is encoded by PTPN2) is a JAK/STAT and growth factor receptor phosphatase that has been linked to the pathogenesis of type 1 diabetes, rheumatoid arthritis, and Crohn's disease by GWAS. In this issue of the JCI, Wiede and colleagues have generated a T cell-specific deletion of TCPTP and identified a novel role for this phosphatase as a negative regulator of TCR signaling. These data provide new insight as to how noncoding PTPN2 SNPs identified in GWAS could drive human autoimmune diseases.

Indexed as

AnimalsAutoimmune DiseasesImmune ToleranceProtein Tyrosine Phosphatase, Non-Receptor Type 2Receptors, Antigen, T-CellT-Lymphocyte SubsetsProtein Tyrosine Phosphatase, Non-Receptor Type 2Ptpn2 protein, mouseReceptors, Antigen, T-Cell

Identifiers

PMID22080861
PMCPMC3226009
OpenAlexW2076780748

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.