Evidence map›Paper›PMID 22080838›Full record

SynthesisHuman molecular genetics2012

A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.

Michael H Cho, Peter J Castaldi, Emily S Wan, Mateusz Siedlinski, Craig P Hersh, Dawn L Demeo, Blanca E Himes, Jody S Sylvia, Barbara J Klanderman, John P Ziniti and 32 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers, 12 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed, 12 pooled it
18.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 12 syntheses or guidelines pooled it, 273 citations in OpenAlex.

  1. Pooled it
  2. Different Associations Between theFrontiers in genetics · 2020
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  20. Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.American journal of respiratory and critical care medicine · 2012
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87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 19 institutions in 7 countries.

Michael H ChoChanning Laboratory, Brigham & Women’s Hospital, Boston, MA 02115, USA. michael.cho@channing.harvard.edu
Peter J Castaldi
Emily S Wan
Mateusz Siedlinski
Craig P Hersh
Dawn L Demeo
Blanca E Himes
Jody S Sylvia
Barbara J Klanderman
John P Ziniti
Christoph Lange
Augusto A Litonjua
David Sparrow
Elizabeth A Regan
Barry J Make
John E Hokanson
Tanda Murray
Jacqueline B Hetmanski
Sreekumar G Pillai
Xiangyang Kong
Wayne H Anderson
Ruth Tal-Singer
David A Lomas
Harvey O Coxson
Lisa D Edwards
William MacNee
Jørgen Vestbo
Julie C Yates
Alvar Agusti
Peter M A Calverley
Bartolome Celli
Courtney Crim
Stephen Rennard
Emiel Wouters
Per Bakke
Amund Gulsvik
James D Crapo
Terri H Beaty
Edwin K Silverman
ICGN Investigators
ECLIPSE Investigators
COPDGene Investigators
Brigham and Women's Hospital · USJohns Hopkins University · USResearch Triangle Park Foundation · USGlaxoSmithKline (United States) · USNational Jewish Health · USBoston University · USColorado School of Public Health · USHarvard University · USHaukeland University Hospital · NOHvidovre Hospital · DKMaastricht University · NLUniversitat Pompeu Fabra · ESUniversity of Bergen · NOUniversity of British Columbia · CAUniversity of Cambridge · GBUniversity of Colorado Denver · USUniversity of Edinburgh · GBUniversity of Liverpool · GBUniversity of Nebraska at Omaha · US

Funding

Genetic Epidemiology of COPDU01HL089897 · NHLBI · NATIONAL JEWISH HEALTH · PI CRAPO, JAMES D · 2007 to 2021
$56.9M
Genetic Epidemiology of COPDU01HL089856 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2007 to 2021
$20.7M
Systems Biology, Bioinformatics, and BiostatisticsP01HL105339 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2011 to 2015
$12.2M
Statistical GeneticsP01HL083069 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2011
$12.2M
Fine Mapping of COPD Susceptibility GenesR01HL075478 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2004 to 2012
$6.4M
Genetic Determinants of COPD in Diverse Ethnic GroupsR01HL084323 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2007 to 2010
$2.6M
Impact of CPAP on Functional Outcomes in Milder OSAR01HL076101 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI WEAVER, TERRI ELIZABETH · 2003 to 2006
$2.6M
Translational Genetics and Genomics of Airways DiseasesK12HL089990 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2012
$1.9M
Modeling of Lung HIV Cytokine/Chemokine NetworksR01HL076114 · NHLBI · BOSTON MEDICAL CENTER · PI SKOLNIK, PAUL R · 2003 to 2006
$1.8M
Training Program in Academic Pulmonary MedicineT32HL076118 · NHLBI · EMORY UNIVERSITY · PI HART, C MICHAEL · 2004 to 2013
$1.7M
Neurotrophins and Development of Baroreceptor Pathways.R01HL076113 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI BALKOWIEC, AGNIESZKA Z · 2005 to 2009
$1.5M
CLINICAL COORDINATING CENTER FOR LVRS-N01HR76119-268076119-268076119N01HR076119 · HR · JOHNS HOPKINS UNIVERSITY · PI PIANTADOSI, STEVEN · 1997 to 2006
$871k
Medical Research Council G0901786NHLBI NIH HHS K08 HL097029NHLBI NIH HHS K08 HL102265NHLBI NIH HHS K12 HL089990NHLBI NIH HHS K12HL089990NHLBI NIH HHS K99 HL105663NHLBI NIH HHS L30 HL110358NHLBI NIH HHS N01 HR076101NHLBI NIH HHS N01 HR076102NHLBI NIH HHS N01 HR076103NHLBI NIH HHS N01 HR076104NHLBI NIH HHS N01 HR076105NHLBI NIH HHS N01 HR076106NHLBI NIH HHS N01 HR076107NHLBI NIH HHS N01 HR076108NHLBI NIH HHS N01 HR076109NHLBI NIH HHS N01 HR076110NHLBI NIH HHS N01 HR076111NHLBI NIH HHS N01 HR076112NHLBI NIH HHS N01 HR076113NHLBI NIH HHS N01 HR076114NHLBI NIH HHS N01 HR076115NHLBI NIH HHS N01 HR076116NHLBI NIH HHS N01 HR076118NHLBI NIH HHS N01 HR076119NHLBI NIH HHS P01 HL083069NHLBI NIH HHS P01 HL105339NHLBI NIH HHS R01 HL075478NHLBI NIH HHS R01 HL084323NHLBI NIH HHS U01 HL089856NHLBI NIH HHS U01 HL089897NIEHS NIH HHS R25 ES011080
6 · The paper itself

Abstract

The genetic risk factors for chronic obstructive pulmonary disease (COPD) are still largely unknown. To date, genome-wide association studies (GWASs) of limited size have identified several novel risk loci for COPD at CHRNA3/CHRNA5/IREB2, HHIP and FAM13A; additional loci may be identified through larger studies. We performed a GWAS using a total of 3499 cases and 1922 control subjects from four cohorts: the Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints (ECLIPSE); the Normative Aging Study (NAS) and National Emphysema Treatment Trial (NETT); Bergen, Norway (GenKOLS); and the COPDGene study. Genotyping was performed on Illumina platforms with additional markers imputed using 1000 Genomes data; results were summarized using fixed-effect meta-analysis. We identified a new genome-wide significant locus on chromosome 19q13 (rs7937, OR = 0.74, P = 2.9 × 10(-9)). Genotyping this single nucleotide polymorphism (SNP) and another nearby SNP in linkage disequilibrium (rs2604894) in 2859 subjects from the family-based International COPD Genetics Network study (ICGN) demonstrated supportive evidence for association for COPD (P = 0.28 and 0.11 for rs7937 and rs2604894), pre-bronchodilator FEV(1) (P = 0.08 and 0.04) and severe (GOLD 3&4) COPD (P = 0.09 and 0.017). This region includes RAB4B, EGLN2, MIA and CYP2A6, and has previously been identified in association with cigarette smoking behavior.

Indexed as

Genome-Wide Association StudyChromosomes, Human, Pair 19Follow-Up StudiesGenetic Predisposition to DiseaseGenotyping TechniquesHumansPulmonary Disease, Chronic Obstructive

Identifiers

PMID22080838
PMCPMC3298111
OpenAlexW2131423215

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.