Evidence map›Paper›PMID 22080559›Full record

ArticleNucleic acids research2012

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.

Martha B Arnaud, Gustavo C Cerqueira, Diane O Inglis, Marek S Skrzypek, Jonathan Binkley, Marcus C Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah and 6 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed.

  1. Article
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  5. Hydrophobins fromEnvironmental science & technology · 2025
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  9. Genomic Analysis ofJournal of fungi (Basel, Switzerland) · 2024
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  12. Review
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  14. Article
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  17. The Sugar Metabolic Model ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  18. Review
  19. Article
  20. Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Martha B ArnaudDepartment of Genetics, Stanford University Medical School, Stanford, CA 94305-5120, USA. arnaudm@stanford.edu
Gustavo C Cerqueira
Diane O Inglis
Marek S Skrzypek
Jonathan Binkley
Marcus C Chibucos
Jonathan Crabtree
Clinton Howarth
Joshua Orvis
Prachi Shah
Farrell Wymore
Gail Binkley
Stuart R Miyasato
Matt Simison
Gavin Sherlock
Jennifer R Wortman

Funding

Aspergillus Genome DatabaseR01AI077599 · NIAID · STANFORD UNIVERSITY · PI SHERLOCK, GAVIN J · 2009 to 2013
$3.4M
NIAID NIH HHS R01 AI077599
6 · The paper itself

Abstract

The Aspergillus Genome Database (AspGD; http://www.aspgd.org) is a freely available, web-based resource for researchers studying fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD curators have now completed comprehensive review of the entire published literature about Aspergillus nidulans and Aspergillus fumigatus, and this annotation is provided with streamlined, ortholog-based navigation of the multispecies information. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. AspGD also provides resources to foster interaction and dissemination of community information and resources. We welcome and encourage feedback at aspergillus-curator@lists.stanford.edu.

Indexed as

Databases, GeneticGenome, FungalAspergillusAspergillus fumigatusAspergillus nidulansGenes, FungalGenomicsMolecular Sequence Annotation

Identifiers

PMID22080559
PMCPMC3245136

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.