ArticleNucleic acids research2012
CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Mismatch uracil DNA glycosylase (Mug) is maintained in the Corynebacterium pseudotuberculosis genome and exhibits affinity for uracil but not other types of damage.Genetics and molecular biology · 2025Article
- CoryneRegNet 7, the reference database and analysis platform for corynebacterial gene regulatory networks.Scientific data · 2020Article
- Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization.Computational and structural biotechnology journal · 2020Article
- Article
- Transcriptome profile of Corynebacterium pseudotuberculosis in response to iron limitation.BMC genomics · 2019Article
- Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions.Scientific reports · 2019Article
- Identifying the Growth Modulon ofFrontiers in microbiology · 2019Article
- Deciphering the Adaptation ofGenes · 2018Article
- PRODORIC2: the bacterial gene regulation database in 2018.Nucleic acids research · 2018Article
- Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes.Scientific reports · 2017Article
- Comparative analysis of the Corynebacterium glutamicum transcriptome in response to changes in dissolved oxygen levels.Journal of industrial microbiology & biotechnology · 2017Article
- A new genome-scale metabolic model ofBiotechnology for biofuels · 2017Article
- Parametric bootstrapping for biological sequence motifs.BMC bioinformatics · 2016Article
- Assessment of transfer methods for comparative genomics of regulatory networks in bacteria.BMC bioinformatics · 2016Article
- Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria.Database : the journal of biological databases and curation · 2016Article
- Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.Journal of bacteriology · 2015Article
- CMRegNet-An interspecies reference database for corynebacterial and mycobacterial regulatory networks.BMC genomics · 2015Article
- Ribosome binding site libraries and pathway modules for shikimic acid synthesis with Corynebacterium glutamicum.Microbial cell factories · 2015Article
- Metabolic pathway engineering for production of 1,2-propanediol and 1-propanol by Corynebacterium glutamicum.Biotechnology for biofuels · 2015Article
- Label-free proteomic analysis to confirm the predicted proteome of Corynebacterium pseudotuberculosis under nitrosative stress mediated by nitric oxide.BMC genomics · 2014Article
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5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Post-genomic analysis techniques such as next-generation sequencing have produced vast amounts of data about micro organisms including genetic sequences, their functional annotations and gene regulatory interactions. The latter are genetic mechanisms that control a cell's characteristics, for instance, pathogenicity as well as survival and reproduction strategies. CoryneRegNet is the reference database and analysis platform for corynebacterial gene regulatory networks. In this article we introduce the updated version 6.0 of CoryneRegNet and describe the updated database content which includes, 6352 corynebacterial regulatory interactions compared with 4928 interactions in release 5.0 and 3235 regulations in release 4.0, respectively. We also demonstrate how we support the community by integrating analysis and visualization features for transiently imported custom data, such as gene regulatory interactions. Furthermore, with release 6.0, we provide easy-to-use functions that allow the user to submit data for persistent storage with the CoryneRegNet database. Thus, it offers important options to its users in terms of community demands. CoryneRegNet is publicly available at http://www.coryneregnet.de.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.