Evidence map›Paper›PMID 22079366›Full record

ArticleJournal of molecular biology2012

YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli.

Georgeta N Basturea, Darryl R Dague, Murray P Deutscher, Kenneth E Rudd

Abstract read
In one paragraph

Article in Journal of molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Characterization of Tellurite Toxicity toInternational journal of molecular sciences · 2025
    Article
  3. Article
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  5. Review
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  7. Review
  8. Review
  9. Comprehensive Functional Analysis ofFrontiers in genetics · 2020
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. EcoGene 3.0.Nucleic acids research · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Georgeta N BastureaDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136, USA.
Darryl R Dague
Murray P Deutscher
Kenneth E Rudd
University of Miami · US

Funding

RNases and RNA Metabolism in BacteriaR01GM016317 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI DEUTSCHER, MURRAY P · 1985 to 2019
$9.1M
SciBay: A New Methodology for Scientific Collaboration and Gene Function DetermiRC2GM092602 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KASIF, SIMON, ROBERTS, RICHARD J · 2009 to 2010
$4.0M
TARGETED FUNCTIONAL GENOMICS AND PROTEOMICS OF E COLIR01GM058560 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI RUDD, KENNETH EDWARD · 2000 to 2012
$2.7M
GTP BINDING PROTEIN ACTIVATORF32GM016317 · NIGMS · U.S. NATIONAL INST/CHILD HLTH/HUMAN DEV · PI OOI, CHEAN E · 1993 to 1995
–
NIGMS NIH HHS F32 GM016317NIGMS NIH HHS GM16317NIGMS NIH HHS GM58560NIGMS NIH HHS GM92602NIGMS NIH HHS R01 GM016317NIGMS NIH HHS R01 GM058560NIGMS NIH HHS RC2 GM092602
6 · The paper itself

Abstract

Ten methyltransferases and one pseudouridine synthase are required for complete modification of the small ribosomal subunit in Escherichia coli. Nine methyltransferases, as well as the pseudouridine synthase, are already known. Here, we identify RsmJ, the last unknown methyltransferase required for methylation of m(2)G1516 in 16S ribosomal RNA (rRNA), as the protein encoded by yhiQ. Reverse transcription primer extension analysis reveals that rRNA extracted from a yhiQ deletion strain is not methylated at G1516. Moreover, methylation is restored upon gene complementation. Also, purified recombinant YhiQ specifically methylates 30S subunits extracted from the deletion strain. The absence of the yhiQ gene leads to a cold-sensitive phenotype. Based on these data, we propose that the yhiQ gene be renamed rsmJ.

Indexed as

Base SequenceEscherichia coliEscherichia coli ProteinsMethylationMethyltransferasesModels, MolecularMolecular Sequence DataNucleic Acid ConformationPhenotypeRibosomesRNA, Ribosomal, 16SSubstrate SpecificityEscherichia coli ProteinsMethyltransferasesRNA, Ribosomal, 16S

Identifiers

PMID22079366
PMCPMC4140241
OpenAlexW2058475365

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.