Evidence map›Paper›PMID 22075991›Full record

ArticleNucleic acids research2012

The Gene Wiki in 2011: community intelligence applied to human gene annotation.

Benjamin M Good, Erik L Clarke, Luca de Alfaro, Andrew I Su

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Scientific Discovery Games for Biomedical Research.Annual review of biomedical data science · 2019
    Article
  6. Article
  7. Article
  8. Protein Bioinformatics Databases and Resources.Methods in molecular biology (Clifton, N.J.) · 2017
    Review
  9. Article
  10. Article
  11. SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care.Journal of the American Medical Informatics Association : JAMIA · 2016
    Article
  12. Article
  13. Crowd-sourcing and author submission as alternatives to professional curation.Database : the journal of biological databases and curation · 2016
    Article
  14. Wikidata as a semantic framework for the Gene Wiki initiative.Database : the journal of biological databases and curation · 2016
    Article
  15. Harnessing the heart of big data.Circulation research · 2015
    Article
  16. Biological databases for human research.Genomics, proteomics & bioinformatics · 2015
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Benjamin M GoodDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA. bgood@scripps.edu
Erik L Clarke
Luca de Alfaro
Andrew I Su
University of California, Santa Cruz · USScripps Research Institute · US

Funding

BioGPS: Extensible Web 2.0 gene portal for structured and unstructured annotationR01GM083924 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SU, ANDREW I, WU, CHUNLEI · 2008 to 2021
$5.6M
The Gene Wiki: Community intelligence applied to gene annotationR01GM089820 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SU, ANDREW I · 2010 to 2021
$5.2M
NIGMS NIH HHS GM083924NIGMS NIH HHS GM089820
6 · The paper itself

Abstract

The Gene Wiki is an open-access and openly editable collection of Wikipedia articles about human genes. Initiated in 2008, it has grown to include articles about more than 10,000 genes that, collectively, contain more than 1.4 million words of gene-centric text with extensive citations back to the primary scientific literature. This growing body of useful, gene-centric content is the result of the work of thousands of individuals throughout the scientific community. Here, we describe recent improvements to the automated system that keeps the structured data presented on Gene Wiki articles in sync with the data from trusted primary databases. We also describe the expanding contents, editors and users of the Gene Wiki. Finally, we introduce a new automated system, called WikiTrust, which can effectively compute the quality of Wikipedia articles, including Gene Wiki articles, at the word level. All articles in the Gene Wiki can be freely accessed and edited at Wikipedia, and additional links and information can be found at the project's Wikipedia portal page: http://en.wikipedia.org/wiki/Portal:Gene_Wiki.

Indexed as

Databases, Nucleic AcidGenesMolecular Sequence AnnotationEncyclopedias as TopicHumansInternetProteinsSoftwareProteins

Identifiers

PMID22075991
PMCPMC3245148
OpenAlexW2064060400

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.