Evidence map›Paper›PMID 22074846›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus.

Elizabeth A Shank, Vanja Klepac-Ceraj, Leonardo Collado-Torres, Gordon E Powers, Richard Losick, Roberto Kolter

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 117 citations in OpenAlex.

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  17. Review
  18. Article
  19. Article
  20. Interactions BetweenFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Elizabeth A ShankDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Vanja Klepac-Ceraj
Leonardo Collado-Torres
Gordon E Powers
Richard Losick
Roberto Kolter
Harvard University · US

Funding

Treatments for Nipah Virus InfectionU54AI057159 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI KASPER, DENNIS L. · 2003 to 2013
$113.7M
Role of RNA Polymerase in Bacterial DifferentionR01GM018568 · NIGMS · HARVARD UNIVERSITY · PI LOSICK, RICHARD MARC · 1985 to 2018
$11.5M
MOLECULAR GENETICS OF BIOFILM FORMATIONR01GM058213 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RUDNER, DAVID Z · 1998 to 2017
$7.5M
Chemical Biology of Mircobial Interspecies SignalingR01GM082137 · NIGMS · HARVARD MEDICAL SCHOOL · PI KOLTER, ROBERTO G. · 2007 to 2015
$3.5M
ROLE OF RNA POLYMERASE IN BACTERIAL DIFFERENTIATIONR37GM018568 · NIGMS · HARVARD UNIVERSITY · PI LOSICK, RICHARD MARC · 1990 to 1999
–
Howard Hughes Medical InstituteNIAID NIH HHS AI057159NIAID NIH HHS U54 AI057159NIGMS NIH HHS GM18568NIGMS NIH HHS GM58213NIGMS NIH HHS GM82137NIGMS NIH HHS R01 GM018568NIGMS NIH HHS R01 GM058213NIGMS NIH HHS R01 GM082137NIGMS NIH HHS R37 GM018568
6 · The paper itself

Abstract

Many different systems of bacterial interactions have been described. However, relatively few studies have explored how interactions between different microorganisms might influence bacterial development. To explore such interspecies interactions, we focused on Bacillus subtilis, which characteristically develops into matrix-producing cannibals before entering sporulation. We investigated whether organisms from the natural environment of B. subtilis--the soil--were able to alter the development of B. subtilis. To test this possibility, we developed a coculture microcolony screen in which we used fluorescent reporters to identify soil bacteria able to induce matrix production in B. subtilis. Most of the bacteria that influence matrix production in B. subtilis are members of the genus Bacillus, suggesting that such interactions may be predominantly with close relatives. The interactions we observed were mediated via two different mechanisms. One resulted in increased expression of matrix genes via the activation of a sensor histidine kinase, KinD. The second was kinase independent and conceivably functions by altering the relative subpopulations of B. subtilis cell types by preferentially killing noncannibals. These two mechanisms were grouped according to the inducing strain's relatedness to B. subtilis. Our results suggest that bacteria preferentially alter their development in response to secreted molecules from closely related bacteria and do so using mechanisms that depend on the phylogenetic relatedness of the interacting bacteria.

Indexed as

Soil MicrobiologyBacillus subtilisBacterial ProteinsBase SequenceBiofilmsExtracellular MatrixFluorescenceGene Expression Regulation, BacterialLikelihood FunctionsMicrobial ViabilityModels, GeneticMolecular Sequence DataPhylogenyQuorum SensingRNA, Ribosomal, 16SSequence Analysis, DNABacterial ProteinsRNA, Ribosomal, 16S

Identifiers

PMID22074846
PMCPMC3228442
OpenAlexW2018956039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.