Evidence map›Paper›PMID 22074780›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Crystal structure of the GlnZ-DraG complex reveals a different form of PII-target interaction.

Chitra Rajendran, Edileusa C M Gerhardt, Sasa Bjelic, Antonietta Gasperina, Marcelo Scarduelli, Fábio O Pedrosa, Leda S Chubatsu, Mike Merrick, Emanuel M Souza, Fritz K Winkler and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Allosteric regulation of nitrate transporter NRT via the signaling protein PII.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Production of l-glutamate family amino acids inSynthetic and systems biotechnology · 2021
    Review
  7. ADP-ribosylation systems in bacteria and viruses.Computational and structural biotechnology journal · 2021
    Review
  8. Article
  9. NADThe Journal of biological chemistry · 2020
    Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. The PFrontiers in molecular biosciences · 2018
    Review
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Chitra RajendranMacromolecular Crystallography, Swiss Light Source, Paul Scherrer Institut, 5232 Villigen PSI, Switzerland.
Edileusa C M Gerhardt
Sasa Bjelic
Antonietta Gasperina
Marcelo Scarduelli
Fábio O Pedrosa
Leda S Chubatsu
Mike Merrick
Emanuel M Souza
Fritz K Winkler
Luciano F Huergo
Xiao-Dan Li
Universidade Federal do Paraná · BRPaul Scherrer Institute · CHNorwich Research Park · GBSwiss Light Source

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrogen metabolism in bacteria and archaea is regulated by a ubiquitous class of proteins belonging to the P(II)family. P(II) proteins act as sensors of cellular nitrogen, carbon, and energy levels, and they control the activities of a wide range of target proteins by protein-protein interaction. The sensing mechanism relies on conformational changes induced by the binding of small molecules to P(II) and also by P(II) posttranslational modifications. In the diazotrophic bacterium Azospirillum brasilense, high levels of extracellular ammonium inactivate the nitrogenase regulatory enzyme DraG by relocalizing it from the cytoplasm to the cell membrane. Membrane localization of DraG occurs through the formation of a ternary complex in which the P(II) protein GlnZ interacts simultaneously with DraG and the ammonia channel AmtB. Here we describe the crystal structure of the GlnZ-DraG complex at 2.1 Å resolution, and confirm the physiological relevance of the structural data by site-directed mutagenesis. In contrast to other known P(II) complexes, the majority of contacts with the target protein do not involve the T-loop region of P(II). Hence this structure identifies a different mode of P(II) interaction with a target protein and demonstrates the potential for P(II) proteins to interact simultaneously with two different targets. A structural model of the AmtB-GlnZ-DraG ternary complex is presented. The results explain how the intracellular levels of ATP, ADP, and 2-oxoglutarate regulate the interaction between these three proteins and how DraG discriminates GlnZ from its close paralogue GlnB.

Indexed as

Models, MolecularProtein ConformationAzospirillum brasilenseBacterial ProteinsBiological TransportCation Transport ProteinsCell MembraneCrystallizationMultiprotein ComplexesMutagenesis, Site-DirectedNitrogenNitrogenasePII Nitrogen Regulatory ProteinsQuaternary Ammonium CompoundsBacterial ProteinsCation Transport ProteinsGlnZ protein, Azospirillum brasilenseMultiprotein ComplexesNitrogenNitrogenasePII Nitrogen Regulatory ProteinsQuaternary Ammonium Compounds

Identifiers

PMID22074780
PMCPMC3223478
OpenAlexW2094548761

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.