Evidence map›Paper›PMID 22074045›Full record

ArticleThe Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association2013

The FGF and FGFR Gene Family and Risk of Cleft Lip With or Without Cleft Palate.

Hong Wang, Tianxiao Zhang, Tao Wu, Jacqueline B Hetmanski, Ingo Ruczinski, Holger Schwender, Kung Yee Liang, Tanda Murray, M Daniele Fallin, Richard J Redett and 11 more

Open access · greenAbstract read
In one paragraph

Article in The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. The impact of developmental genes in non-syndromic cleft lip and/or palateJournal of the Turkish German Gynecological Association · 2023
    Article
  7. Article
  8. Open medicine (Warsaw, Poland) · 2023
    Article
  9. The Evaluation ofChildren (Basel, Switzerland) · 2022
    Article
  10. Orofacial Cleft and Mandibular Prognathism-Human Genetics and Animal Models.International journal of molecular sciences · 2022
    Review
  11. Article
  12. Expression Analysis ofBiology · 2021
    Article
  13. Frontiers in physiology · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 6 countries.

Hong Wang
Tianxiao Zhang
Tao Wu
Jacqueline B Hetmanski
Ingo Ruczinski
Holger Schwender
Kung Yee Liang
Tanda Murray
M Daniele Fallin
Richard J Redett
Gerald V Raymond
Sheng-Chih Jin
Yah-Huei Wu Chou
Philip Kuo-Ting Chen
Vincent Yeow
Samuel S Chong
Felicia S H Cheah
Sun Ha Jee
Ethylin W Jabs
Alan F Scott
Terri H Beaty
Johns Hopkins University · USChang Gung Memorial Hospital · TWNational University of Singapore · SGPeking University · CNIcahn School of Medicine at Mount Sinai · USKK Women's and Children's Hospital · SGNational Yang Ming Chiao Tung University · TWTU Dortmund University · DEYonsei University · KR

Funding

International Genetic Epidemiology of Oral CleftsR01DE014581 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2004 to 2013
$6.6M
Collaborative Genetics Research Training ProgramD43TW006176 · FIC · JOHNS HOPKINS UNIVERSITY · PI JABS, ETHYLIN WANG · 2002 to 2006
$2.0M
International Consortium to Identify Genes and Interactions Controlling Oral ClefU01DE018993 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2007 to 2008
$1.6M
INTERNATIONAL GENETIC EPIDEMIOLOGY OF ORAL CLEFTSR21DE013707 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2000 to 2001
$246k
FIC NIH HHS D43 TW006176NIDCR NIH HHS R01 DE014581NIDCR NIH HHS U01 DE018993
6 · The paper itself

Abstract

Background : Isolated, nonsyndromic cleft lip with or without cleft palate is a common human congenital malformation with a complex and heterogeneous etiology. Genes coding for fibroblast growth factors and their receptors (FGF/FGFR genes) are excellent candidate genes. Methods : We tested single-nucleotide polymorphic markers in 10 FGF/FGFR genes (including FGFBP1, FGF2, FGF10, FGF18, FGFR1, FGFR2, FGF19, FGF4, FGF3, and FGF9) for genotypic effects, interactions with one another, and with common maternal environmental exposures in 221 Asian and 76 Maryland case-parent trios ascertained through a child with isolated, nonsyndromic cleft lip with or without cleft palate. Results : Both FGFR1 and FGF19 yielded evidence of linkage and association in the transmission disequilibrium test, confirming previous evidence. Haplotypes of three single-nucleotide polymorphisms in FGFR1 were nominally significant among Asian trios. Estimated odds ratios for individual single-nucleotide polymorphic markers and haplotypes of multiple markers in FGF19 ranged from 1.31 to 1.87. We also found suggestive evidence of maternal genotypic effects for markers in FGF2 and FGF10 among Asian trios. Tests for gene-environment (G × E) interaction between markers in FGFR2 and maternal smoking or multivitamin supplementation yielded significant evidence of G × E interaction separately. Tests of gene-gene (G × G) interaction using Cordell's method yielded significant evidence between single-nucleotide polymorphisms in FGF9 and FGF18, which was confirmed in an independent sample of trios from an international consortium. Conclusion : Our results suggest several genes in the FGF/FGFR family may influence risk for isolated, nonsyndromic cleft lip with or without cleft palate through distinct biological mechanisms.

Indexed as

Cleft LipCleft PalateHaplotypesHumansLinkage DisequilibriumPolymorphism, Single Nucleotide

Identifiers

PMID22074045
PMCPMC3387510
OpenAlexW2171405832

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.