Evidence map›Paper›PMID 22072770›Full record

ArticleJournal of virology2012

Contributions of CTCF and DNA methyltransferases DNMT1 and DNMT3B to Epstein-Barr virus restricted latency.

David J Hughes, Elessa M Marendy, Carol A Dickerson, Kristen D Yetming, Clare E Sample, Jeffery T Sample

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. Epstein-Barr Virus Encoded lncRNAs Control the Viral Lytic Switch.bioRxiv : the preprint server for biology · 2025
    Article
  4. Review
  5. Article
  6. Viral remodeling of the 4D nucleome.Experimental & molecular medicine · 2024
    Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Dynamics of Viral and Host 3D Genome Structure upon Infection.Journal of microbiology and biotechnology · 2022
    Review
  12. Review
  13. Article
  14. Epigenetic control of the Epstein-Barr lifecycle.Current opinion in virology · 2022
    Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

David J HughesDepartment of Microbiology and Immunology, Pennsylvania State University College of Medicine, and Penn State Hershey Cancer Institute, Hershey, Pennsylvania, USA.
Elessa M Marendy
Carol A Dickerson
Kristen D Yetming
Clare E Sample
Jeffery T Sample
Penn State Milton S. Hershey Medical Center · US

Funding

FUNCTION OF EBV EBNA-3C IN B CELL IMMORTALIZATIONR01CA056645 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SAMPLE, CLARE E · 1998 to 2008
$1.8M
Role of Epstein-Barr Virus in Burkitt LymphomaR01CA073544 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SAMPLE, JEFFERY T · 1996 to 2007
$1.6M
Function of the Epstein-Barr Virus EBNA-A3 ProteinR01CA117827 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SAMPLE, CLARE E · 2006 to 2010
$1.3M
Mechanisms of Gene Regulation by EBV EBNA-1 ProteinR01AI073215 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI SAMPLE, JEFFERY T · 2009 to 2010
$776k
Mechanisms of Gene Regulation by EBV EBNA-1 ProteinR56AI073215 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI SAMPLE, JEFFERY T · 2008 to 2008
$379k
FUNCTIONS OF EBV PROTEINS IN B-CELL IMMORTALIZATIONR29CA056645 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SAMPLE, CLARE E · 1992 to 1996
–
NCI NIH HHS CA056645NCI NIH HHS CA073544NCI NIH HHS CA117827NCI NIH HHS R01 CA056645NCI NIH HHS R01 CA073544NCI NIH HHS R01 CA117827NIAID NIH HHS AI073215NIAID NIH HHS R01 AI073215NIAID NIH HHS R56 AI073215
6 · The paper itself

Abstract

Establishment of persistent Epstein-Barr virus (EBV) infection requires transition from a program of full viral latency gene expression (latency III) to one that is highly restricted (latency I and 0) within memory B lymphocytes. It is well established that DNA methylation plays a critical role in EBV gene silencing, and recently the chromatin boundary protein CTCF has been implicated as a pivotal regulator of latency via its binding to several loci within the EBV genome. One notable site is upstream of the common EBNA gene promoter Cp, at which CTCF may act as an enhancer-blocking factor to initiate and maintain silencing of EBNA gene transcription. It was previously suggested that increased expression of CTCF may underlie its potential to promote restricted latency, and here we also noted elevated levels of DNA methyltransferase 1 (DNMT1) and DNMT3B associated with latency I. Within B-cell lines that maintain latency I, however, stable knockdown of CTCF, DNMT1, or DNMT3B or of DNMT1 and DNMT3B in combination did not result in activation of latency III protein expression or EBNA gene transcription, nor did knockdown of DNMTs significantly alter CpG methylation within Cp. Thus, differential expression of CTCF and DNMT1 and -3B is not critical for maintenance of restricted latency. Finally, mutant EBV lacking the Cp CTCF binding site exhibited sustained Cp activity relative to wild-type EBV in a recently developed B-cell superinfection model but ultimately was able to transition to latency I, suggesting that CTCF contributes to but is not necessarily essential for the establishment of restricted latency.

Indexed as

Virus LatencyCCCTC-Binding FactorCell LineDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BEpstein-Barr Virus InfectionsEpstein-Barr Virus Nuclear AntigensGene Expression Regulation, ViralHerpesvirus 4, HumanHumansPromoter Regions, GeneticRepressor ProteinsCCCTC-Binding FactorCTCF protein, humanDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BDNMT1 protein, humanEpstein-Barr Virus Nuclear AntigensRepressor Proteins

Identifiers

PMID22072770
PMCPMC3255836
OpenAlexW2105145641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.