Evidence map›Paper›PMID 22072760›Full record

ArticleJournal of virology2012

Conserved glycine 33 residue in flexible domain I of hepatitis C virus core protein is critical for virus infectivity.

Allan G N Angus, Antoine Loquet, Séamus J Stack, David Dalrymple, Derek Gatherer, François Penin, Arvind H Patel

Abstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. 17,β-estradiol inhibits hepatitis C virus mainly by interference with the release phase of its life cycle.Liver international : official journal of the International Association for the Study of the Liver · 2017
    Article
  6. Article
  7. Article
  8. Intrinsic disorder mediates hepatitis C virus core-host cell protein interactions.Protein science : a publication of the Protein Society · 2015
    Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Allan G N AngusMRC--University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
Antoine Loquet
Séamus J Stack
David Dalrymple
Derek Gatherer
François Penin
Arvind H Patel

Funding

Medical Research Council G0801822Medical Research Council MC_U130184144
6 · The paper itself

Abstract

Hepatitis C virus core protein forms the viral nucleocapsid and plays a critical role in the formation of infectious particles. In this study, we demonstrate that the highly conserved residue G33, located within domain 1 of the core protein, is important for the production of cell culture-infectious virus (HCVcc). Alanine substitution at this position in the JFH1 genome did not alter viral RNA replication but reduced infectivity by ∼2 logs. Virus production by this core mutant could be rescued by compensatory mutations located immediately upstream and downstream of the original G33A mutation. The examination of the helix-loop-helix motif observed in the core protein structure (residues 15 to 41; Protein Data Bank entry 1CWX) indicated that the residues G33 and F24 are in close contact with each other, and that the G33A mutation induces a steric clash with F24. Molecular simulations revealed that the compensatory mutations increase the helix-loop-helix flexibility, allowing rescue of the core active conformation required for efficient virus production. Taken together, these data highlight the plasticity of core domain 1 conformation and illustrate the relationship between its structural tolerance to mutations and virus infectivity.

Indexed as

Virus ReplicationAmino Acid SequenceCell LineConserved SequenceGlycineHepacivirusHepatitis CHumansMolecular Sequence DataProtein Structure, TertiarySequence AlignmentViral Core ProteinsGlycinenucleocapsid protein, Hepatitis C virusViral Core Proteins

Identifiers

PMID22072760
PMCPMC3255827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.