Evidence map›Paper›PMID 22072755›Full record

ArticleJournal of virology2012

Viral adaptation to host immune responses occurs in chronic hepatitis B virus (HBV) infection, and adaptation is greatest in HBV e antigen-negative disease.

Christopher P Desmond, Silvana Gaudieri, Ian R James, Katja Pfafferott, Abha Chopra, George K Lau, Jennifer Audsley, Caroline Day, Sarah Chivers, Adam Gordon and 9 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Restoring, releasing or replacing adaptive immunity in chronic hepatitis B.Nature reviews. Gastroenterology & hepatology · 2019
    Review
  8. Article
  9. Immunological cure of HBV infection.Hepatology international · 2019
    Review
  10. CD8Journal of virology · 2018
    Article
  11. Article
  12. Review
  13. Article
  14. Induced immunity against hepatitis B virus.World journal of hepatology · 2015
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 3 countries.

Christopher P DesmondDepartment of Gastroenterology, The Alfred, Melbourne, Australia.
Silvana Gaudieri
Ian R James
Katja Pfafferott
Abha Chopra
George K Lau
Jennifer Audsley
Caroline Day
Sarah Chivers
Adam Gordon
Peter A Revill
Scott Bowden
Anna Ayres
Paul V Desmond
Alexander J Thompson
Stuart K Roberts
Stephen A Locarnini
Simon A Mallal
Sharon R Lewin
Murdoch University · AUVictorian Infectious Diseases Reference Laboratory · AUMonash University · AUBox Hill Hospital · AUThe Alfred Hospital · AURoyal Perth Hospital · AUSt Vincent's Hospital · AUUniversity of Hong Kong · HKUniversity of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis B virus (HBV)-specific T-cell responses are important in the natural history of HBV infection. The number of known HBV-specific T-cell epitopes is limited, and it is not clear whether viral evolution occurs in chronic HBV infection. We aimed to identify novel HBV T-cell epitopes by examining the relationship between HBV sequence variation and the human leukocyte antigen (HLA) type in a large prospective clinic-based cohort of Asian patients with chronic HBV infection recruited in Australia and China (n = 119). High-resolution 4-digit HLA class I and II typing and full-length HBV sequencing were undertaken for treatment-naïve individuals (52% with genotype B, 48% with genotype C, 63% HBV e antigen [HBeAg] positive). Statistically significant associations between HLA types and HBV sequence variation were identified (n = 49) at 41 sites in the HBV genome. Using prediction programs, we determined scores for binding between peptides containing these polymorphisms and associated HLA types. Among the regions that could be tested, HLA binding was predicted for 14/18 (78%). We identified several HLA-associated polymorphisms involving likely known anchor residues that resulted in altered predicted binding scores. Some HLA-associated polymorphisms fell within known T-cell epitopes with matching HLA restriction. Enhanced viral adaptation (defined as the presence of the relevant HLA and the escaped amino acid) was independently associated with HBeAg-negative disease (P = 0.003). Thus, HBV appears to be under immune pressure in chronic HBV infection, particularly in HBeAg-negative disease.

Indexed as

Adaptation, BiologicalAmino Acid SequenceAustraliaChinaEpitopes, T-LymphocyteFemaleHepatitis B, ChronicHepatitis B e AntigensHepatitis B virusHLA AntigensHost-Pathogen InteractionsHumansMaleMolecular Sequence DataPhylogenyPolymorphism, GeneticEpitopes, T-LymphocyteHepatitis B e AntigensHLA Antigens

Identifiers

PMID22072755
PMCPMC3255822
OpenAlexW2020860190

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.