Evidence map›Paper›PMID 22072710›Full record

ArticleThe Journal of biological chemistry2012

HIV-1 Vpu protein antagonizes innate restriction factor BST-2 via lipid-embedded helix-helix interactions.

Mark Skasko, Yan Wang, Ye Tian, Andrey Tokarev, Jason Munguia, Autumn Ruiz, Edward B Stephens, Stanley J Opella, John Guatelli

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 1 synthesis or guideline pooled it, 103 citations in OpenAlex.

  1. HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.Microbiology and molecular biology reviews : MMBR · 2016
    Pooled it
  2. Review
  3. Review
  4. Article
  5. Multi-functional BST2/tetherin against HIV-1, other viruses and LINE-1.Frontiers in cellular and infection microbiology · 2022
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Medical sciences (Basel, Switzerland) · 2019
    Article
  15. Article
  16. Article
  17. Limiting Respiratory Viral Infection by Targeting Antiviral and Immunological Functions of BST-2/Tetherin: Knowledge and Gaps.BioEssays : news and reviews in molecular, cellular and developmental biology · 2018
    Review
  18. Article
  19. Review
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mark SkaskoDepartment of Medicine, University of California, San Diego, La Jolla, California, 92093.
Yan WangDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093.
Ye TianDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093.
Andrey TokarevDepartment of Medicine, University of California, San Diego, La Jolla, California, 92093.
Jason MunguiaDepartment of Medicine, University of California, San Diego, La Jolla, California, 92093.
Autumn RuizDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, Kansas, 66160.
Edward B StephensDepartment of Microbiology, Molecular Genetics, and Immunology, University of Kansas Medical Center, Kansas City, Kansas 66160.
Stanley J OpellaDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093. Electronic address: sopella@ucsd.edu.
John GuatelliDepartment of Medicine, University of California, San Diego, La Jolla, California, 92093; San Diego Veterans Affairs Healthcare System, San Diego, California 92161. Electronic address: jguatelli@ucsd.edu.
University of California, San Diego · USUniversity of Kansas Medical Center · US

Funding

RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
HIV-1 Vpu and BST-2/CD317R37AI081668 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2014 to 2023
$4.8M
Structure, Dynamics, and Functions of the Viroporins Vpu from HIV and p7 from HCVR01GM066978 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2016
$3.5M
THE ROLE OF VPU IN HIV-1 PATHOGENESISR01AI051981 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI STEPHENS, EDWARD BRICE · 2002 to 2011
$3.1M
HIV-1 Vpu and BST-2/CD317R01AI081668 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2009 to 2013
$2.1M
NIAID NIH HHS AI051981NIAID NIH HHS AI081668NIAID NIH HHS R01 AI051981NIAID NIH HHS R01 AI081668NIAID NIH HHS R37 AI081668NIBIB NIH HHS P41 EB002031NIBIB NIH HHS P41EB002031NIGMS NIH HHS GM066978NIGMS NIH HHS R01 GM066978
6 · The paper itself

Abstract

The Vpu protein of HIV-1 antagonizes BST-2 (tetherin), a broad spectrum effector of the innate immune response to viral infection, by an intermolecular interaction that maps genetically to the α-helical transmembrane domains (TMDs) of each protein. Here we utilize NMR spectroscopy to describe key features of the helix-helix pairing that underlies this interaction. The antagonism of BST-2 involves a sequence of three alanines and a tryptophan spaced at four residue intervals within the Vpu TMD helix. Responsiveness to Vpu involves bulky hydrophobic residues in the C-terminal region of the BST-2 TMD helix that likely fit between the alanines on the interactive face of Vpu. These aspects of Vpu and BST-2 form an anti-parallel, lipid-embedded helix-helix interface. Changes in human BST-2 that mimic sequences found in nonhuman primate orthologs unresponsive to Vpu change the tilt angle of the TMD in the lipid bilayer without abrogating its intrinsic ability to interact with Vpu. These data explain the mechanism by which HIV-1 evades a key aspect of innate immunity and the species specificity of Vpu using an anti-parallel helix-helix packing model.

Indexed as

Immunity, InnateAmino Acid SequenceAntigens, CDBone Marrow Stromal Antigen 2Cell MembraneGPI-Linked ProteinsHeLa CellsHIV-1Human Immunodeficiency Virus ProteinsHumansHydrophobic and Hydrophilic InteractionsLipid BilayersMicellesModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularAntigens, CDBone Marrow Stromal Antigen 2BST2 protein, humanGPI-Linked ProteinsHuman Immunodeficiency Virus ProteinsLipid BilayersMicellesViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID22072710
PMCPMC3249111
OpenAlexW2016913504

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.