Evidence map›Paper›PMID 22072665›Full record

ReviewThe Journal of neuroscience : the official journal of the Society for Neuroscience2011

Large-scale automated histology in the pursuit of connectomes.

David Kleinfeld, Arjun Bharioke, Pablo Blinder, Davi D Bock, Kevin L Briggman, Dmitri B Chklovskii, Winfried Denk, Moritz Helmstaedter, John P Kaufhold, Wei-Chung Allen Lee and 9 more

Abstract readReview
In one paragraph

Review in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed.

  1. Review
  2. Article
  3. Hierarchical communities in the larvalProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

David KleinfeldDepartment of Physics and Section of Neurobiology, University of California, San Diego, La Jolla, California 92093, USA. dk@physics.ucsd.edu
Arjun Bharioke
Pablo Blinder
Davi D Bock
Kevin L Briggman
Dmitri B Chklovskii
Winfried Denk
Moritz Helmstaedter
John P Kaufhold
Wei-Chung Allen Lee
Hanno S Meyer
Kristina D Micheva
Marcel Oberlaender
Steffen Prohaska
R Clay Reid
Stephen J Smith
Shinya Takemura
Philbert S Tsai
Bert Sakmann

Funding

YEAST ER MOLECULAR CHAPERONE TRANSLOCATION: GENOME DATABANK HOMOLOGSP41RR006009 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI KNOLL, ERIC · 1990 to 2011
$22.0M
Mapping the synaptic connectivity and function of sensory neuronal circuitsZIANS003133 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI BRIGGMAN, KEVIN · 2012 to 2017
$9.2M
Functional micro-architecture of the visual cortexR01EY010115 · NEI · ROCKEFELLER UNIVERSITY · PI REID, R CLAY · 1993 to 2023
$8.9M
Manipulating Neural Tissue With Ultra-Short Laser PulsesR01EB003832 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KAUFHOLD, JOHN, KLEINFELD, DAVID · 2005 to 2014
$8.2M
Neuronal ensembles in the rodent visual cortexR01EY018742 · NEI · HARVARD MEDICAL SCHOOL · PI REID, R CLAY · 2008 to 2015
$3.1M
Defining the Logic of Neurovascular Signaling in the BrainDP1NS082097 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEINFELD, DAVID · 2012 to 2014
$2.3M
Single-Synapse Analysis of Neocortical Circuit PlasticityR01NS075252 · NINDS · STANFORD UNIVERSITY · PI MADISON, VERNON DANIEL, SMITH, STEPHEN J · 2011 to 2014
$2.0M
Defining the Logic of Neurovascular Signaling in the BrainDP1OD006831 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEINFELD, DAVID · 2010 to 2011
$1.5M
Neuronal Signaling, Network Topology, and Blood Flow Dynamics in CortexR01MH085499 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEINFELD, DAVID · 2008 to 2011
$1.2M
Femtosecond Light to Manipulate Neurons and VasculatureR21RR021907 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEINFELD, DAVID · 2005 to 2007
$554k
Array Tomographic Single-Synapse Analysis of Normal and Disordered CortexR21NS063210 · NINDS · STANFORD UNIVERSITY · PI SMITH, STEPHEN J · 2008 to 2009
$385k
Multi-scale mapping of 3D spatial-temporal cortical hemodynamics at the level of R21NS059832 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEINFELD, DAVID · 2007 to 2008
$338k
Howard Hughes Medical InstituteNCRR NIH HHS P41 RR006009NCRR NIH HHS R21 RR021907NCRR NIH HHS RR006009NEI NIH HHS EY010115NEI NIH HHS EY018742NEI NIH HHS R01 EY010115NEI NIH HHS R01 EY018742NIBIB NIH HHS EB003832NIBIB NIH HHS R01 EB003832NIH HHS DP1 OD006831NIMH NIH HHS MH072570NIMH NIH HHS MH085499NIMH NIH HHS R01 MH085499NIMH NIH HHS R21 MH072570NINDS NIH HHS DP1 NS082097NINDS NIH HHS NS059832NINDS NIH HHS NS063210NINDS NIH HHS NS075252NINDS NIH HHS R01 NS075252NINDS NIH HHS R21 NS059832NINDS NIH HHS R21 NS063210
6 · The paper itself

Abstract

How does the brain compute? Answering this question necessitates neuronal connectomes, annotated graphs of all synaptic connections within defined brain areas. Further, understanding the energetics of the brain's computations requires vascular graphs. The assembly of a connectome requires sensitive hardware tools to measure neuronal and neurovascular features in all three dimensions, as well as software and machine learning for data analysis and visualization. We present the state of the art on the reconstruction of circuits and vasculature that link brain anatomy and function. Analysis at the scale of tens of nanometers yields connections between identified neurons, while analysis at the micrometer scale yields probabilistic rules of connection between neurons and exact vascular connectivity.

Indexed as

Models, NeurologicalAnimalsAutomationBrainHumansNeural PathwaysNeuroimagingNeuronsNonlinear DynamicsRetinaSynapses

Identifiers

PMID22072665
PMCPMC3758571

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.