Evidence map›Paper›PMID 22072542›Full record

ArticleThe Journal of pathology2012

Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.

Stephen Yip, Yaron S Butterfield, Olena Morozova, Suganthi Chittaranjan, Michael D Blough, Jianghong An, Inanc Birol, Charles Chesnelong, Readman Chiu, Eric Chuah and 29 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of pathology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 154 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed, 1 pooled it
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 1 synthesis or guideline pooled it, 310 citations in OpenAlex.

  1. Guideline
  2. Trial
  3. Trial
  4. Benefit from procarbazine, lomustine, and vincristine in oligodendroglial tumors is associated with mutation of IDH.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2014
    Trial
  5. Phase III trial of chemoradiotherapy for anaplastic oligodendroglioma: long-term results of RTOG 9402.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2013
    Trial
  6. Review
  7. Article
  8. Current Status and Evolution of Immunotherapy in Glioma Management.International journal of medical sciences · 2026
    Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Clinical roles ofFrontiers in neuroscience · 2024
    Article
  20. Article

94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 3 institutions in 2 countries.

Stephen YipDepartment of Pathology and Laboratory Medicine, BC Cancer Agency, BC, Canada.
Yaron S Butterfield
Olena Morozova
Suganthi Chittaranjan
Michael D Blough
Jianghong An
Inanc Birol
Charles Chesnelong
Readman Chiu
Eric Chuah
Richard Corbett
Rod Docking
Marlo Firme
Martin Hirst
Shaun Jackman
Aly Karsan
Haiyan Li
David N Louis
Alexandra Maslova
Richard Moore
Annie Moradian
Karen L Mungall
Marco Perizzolo
Jenny Qian
Gloria Roldan
Eric E Smith
Jessica Tamura-Wells
Nina Thiessen
Richard Varhol
Samuel Weiss
Wei Wu
Sean Young
Yongjun Zhao
Andrew J Mungall
Steven J M Jones
Gregg B Morin
Jennifer A Chan
J Gregory Cairncross
Marco A Marra
BC Cancer Agency · CAUniversity of Calgary · CAHarvard University · US

Funding

TOWARD A MOLECULAR CLASSIFICATION OF HUMAN GLIOMASR01CA057683 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI LOUIS, DAVID N · 1992 to 2013
$4.7M
NCI NIH HHS R01 CA057683
6 · The paper itself

Abstract

Oligodendroglioma is characterized by unique clinical, pathological, and genetic features. Recurrent losses of chromosomes 1p and 19q are strongly associated with this brain cancer but knowledge of the identity and function of the genes affected by these alterations is limited. We performed exome sequencing on a discovery set of 16 oligodendrogliomas with 1p/19q co-deletion to identify new molecular features at base-pair resolution. As anticipated, there was a high rate of IDH mutations: all cases had mutations in either IDH1 (14/16) or IDH2 (2/16). In addition, we discovered somatic mutations and insertions/deletions in the CIC gene on chromosome 19q13.2 in 13/16 tumours. These discovery set mutations were validated by deep sequencing of 13 additional tumours, which revealed seven others with CIC mutations, thus bringing the overall mutation rate in oligodendrogliomas in this study to 20/29 (69%). In contrast, deep sequencing of astrocytomas and oligoastrocytomas without 1p/19q loss revealed that CIC alterations were otherwise rare (1/60; 2%). Of the 21 non-synonymous somatic mutations in 20 CIC-mutant oligodendrogliomas, nine were in exon 5 within an annotated DNA-interacting domain and three were in exon 20 within an annotated protein-interacting domain. The remaining nine were found in other exons and frequently included truncations. CIC mutations were highly associated with oligodendroglioma histology, 1p/19q co-deletion, and IDH1/2 mutation (p < 0.001). Although we observed no differences in the clinical outcomes of CIC mutant versus wild-type tumours, in a background of 1p/19q co-deletion, hemizygous CIC mutations are likely important. We hypothesize that the mutant CIC on the single retained 19q allele is linked to the pathogenesis of oligodendrogliomas with IDH mutation. Our detailed study of genetic aberrations in oligodendroglioma suggests a functional interaction between CIC mutation, IDH1/2 mutation, and 1p/19q co-deletion.

Indexed as

Biomarkers, TumorBrain NeoplasmsChromosomes, Human, Pair 1Chromosomes, Human, Pair 19Disease-Free SurvivalHumansIsocitrate DehydrogenaseKaplan-Meier EstimateMutationNeoplasm GradingOligodendrogliomaRepressor ProteinsBiomarkers, TumorCIC protein, humanIDH1 protein, humanIDH2 protein, humanIsocitrate DehydrogenaseRepressor Proteins

Identifiers

PMID22072542
PMCPMC3246739
OpenAlexW2021630037

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.