Evidence map›Paper›PMID 22071477›Full record

ArticleThe Journal of investigative dermatology2012

A subset of methylated CpG sites differentiate psoriatic from normal skin.

Elisha D O Roberson, Ying Liu, Caitriona Ryan, Cailin E Joyce, Shenghui Duan, Li Cao, Ann Martin, Wilson Liao, Alan Menter, Anne M Bowcock

Open access · greenAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 2 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 2 syntheses or guidelines pooled it, 160 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Functional Genomics in Psoriasis.International journal of molecular sciences · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Signaling pathways and targeted therapies for psoriasis.Signal transduction and targeted therapy · 2023
    Review
  17. Article
  18. Review
  19. Review
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Elisha D O RobersonDepartment of Genetics, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Ying Liu
Caitriona Ryan
Cailin E Joyce
Shenghui Duan
Li Cao
Ann Martin
Wilson Liao
Alan Menter
Anne M Bowcock
Washington University in St. Louis · USBaylor University Medical Center · USUniversity of California, San Francisco · US

Funding

TRAINING IN THE IMMUNOLOGY OF RHEUMATIC DISEASEST32AR007279 · NIAMS · WASHINGTON UNIVERSITY · PI Megan Anne Cooper, Deborah J Lenschow · 1986 to 2026
$6.0M
Genome-Wide SNP Association in PsoriasisR01AR050266 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY · 2007 to 2016
$5.7M
Systems Biology of PsoriasisRC1AR058681 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY, ZHANG, WEIXIONG · 2009 to 2010
$998k
Genetic Analysis of the TNF Pathway in PsoriasisK08AR057763 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIAO, WILSON · 2010 to 2014
$599k
NIAMS NIH HHS 5RC1AR058681NIAMS NIH HHS AR050266NIAMS NIH HHS K08 AR057763NIAMS NIH HHS R01 AR050266NIAMS NIH HHS RC1 AR058681NIAMS NIH HHS T32 AR007279NIAMS NIH HHS T32AR007279
6 · The paper itself

Abstract

Psoriasis is a chronic inflammatory immune-mediated disorder affecting the skin and other organs including joints. Over 1,300 transcripts are altered in psoriatic involved skin compared with normal skin. However, to our knowledge, global epigenetic profiling of psoriatic skin is previously unreported. Here, we describe a genome-wide study of altered CpG methylation in psoriatic skin. We determined the methylation levels at 27,578 CpG sites in skin samples from individuals with psoriasis (12 involved, 8 uninvolved) and 10 unaffected individuals. CpG methylation of involved skin differed from normal skin at 1,108 sites. Twelve mapped to the epidermal differentiation complex, upstream or within genes that are highly upregulated in psoriasis. Hierarchical clustering of 50 of the top differentially methylated (DM) sites separated psoriatic from normal skin samples with uninvolved skin exhibiting intermediate methylation. CpG sites where methylation was correlated with gene expression are reported. Sites with inverse correlations between methylation and nearby gene expression include those of KYNU, OAS2, S100A12, and SERPINB3, whose strong transcriptional upregulation is an important discriminator of psoriasis. Pyrosequencing of bisulfite-treated DNA from skin biopsies at three DM loci confirmed earlier findings and revealed reversion of methylation levels toward the non-psoriatic state after 1 month of anti-TNF-α therapy.

Indexed as

CpG IslandsDNA MethylationAdalimumabAdultAntibodies, Monoclonal, HumanizedAntigens, NeoplasmAnti-Inflammatory AgentsBase SequenceFemaleGene Expression ProfilingHumansMalePsoriasisS100A12 ProteinS100 ProteinsSequence Analysis, DNAAdalimumabAntibodies, Monoclonal, HumanizedAntigens, NeoplasmAnti-Inflammatory AgentsS100A12 ProteinS100A12 protein, humanS100 ProteinsSerpinssquamous cell carcinoma-related antigen

Identifiers

PMID22071477
PMCPMC3568942
OpenAlexW2027853062

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.