Evidence map›Paper›PMID 22068658›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2011

Two distinct routes to oral cancer differing in genome instability and risk for cervical node metastasis.

Aditi Bhattacharya, Ritu Roy, Antoine M Snijders, Gregory Hamilton, Jesse Paquette, Taku Tokuyasu, Henrik Bengtsson, Richard C K Jordan, Adam B Olshen, Daniel Pinkel and 2 more

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 2 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 2 syntheses or guidelines pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. XRCC1 Arg399Gln polymorphism is not associated with oral cancer risk: evidence from a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
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  8. Upregulation of Synuclein-BioMed research international · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Aditi BhattacharyaHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California 94158, USA.
Ritu Roy
Antoine M Snijders
Gregory Hamilton
Jesse Paquette
Taku Tokuyasu
Henrik Bengtsson
Richard C K Jordan
Adam B Olshen
Daniel Pinkel
Brian L Schmidt
Donna G Albertson
UCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of California, San Francisco · US

Funding

MICROARRAY BASED SCANNING OF THE MOUSE GENOMEU01CA084118 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALBERTSON, DONNA G · 1999 to 2008
$3.9M
Amplicons in Oral DysplasiaR01CA131286 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALBERTSON, DONNA G · 2008 to 2011
$1.1M
High Resolution Genomic Analysis of Amplicon StructureR01CA090421 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALBERTSON, DONNA G. · 2003 to 2007
$1.0M
Genomic and Functional Analysis of Oral Cancer DevelopmentR01CA118323 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALBERTSON, DONNA G · 2007 to 2009
$810k
Predictive Markers for Oral Carcinoma MetastasisR01CA113833 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHMIDT, BRIAN L · 2006 to 2008
$804k
NCI NIH HHS CA113833NCI NIH HHS CA118323NCI NIH HHS CA131286NCI NIH HHS CA84118NCI NIH HHS CA90421NCI NIH HHS R01 CA090421NCI NIH HHS R01 CA113833NCI NIH HHS R01 CA118323NCI NIH HHS R01 CA131286NCI NIH HHS U01 CA084118
6 · The paper itself

Abstract

purposeProblems in management of oral cancers or precancers include identification of patients at risk for metastasis, tumor recurrence, and second primary tumors or risk for progression of precancers (dysplasia) to cancer. Thus, the objective of this study was to clarify the role of genomic aberrations in oral cancer progression and metastasis. EXPERIMENTAL

designThe spectrum of copy number alterations in oral dysplasia and squamous cell carcinomas (SCC) was determined by array comparative genomic hybridization. Associations with clinical characteristics were studied and results confirmed in an independent cohort.

resultsThe presence of one or more of the chromosomal aberrations +3q24-qter, -8pter-p23.1, +8q12-q24.2, and +20 distinguishes a major subgroup (70%-80% of lesions, termed 3q8pq20 subtype) from the remainder (20%-30% of lesions, non-3q8pq20). The 3q8pq20 subtype is associated with chromosomal instability and differential methylation in the most chromosomally unstable tumors. The two subtypes differ significantly in clinical outcome with risk for cervical (neck) lymph node metastasis almost exclusively associated with the 3q8pq20 subtype in two independent oral SCC cohorts.

conclusionsTwo subtypes of oral lesions indicative of at least two pathways for oral cancer development were distinguished that differ in chromosomal instability and risk for metastasis, suggesting that +3q,-8p, +8q, and +20 constitute a biomarker with clinical utility for identifying patients at risk for metastasis. Moreover, although increased numbers of genomic alterations can be harbingers of progression to cancer, dysplastic lesions lacking copy number changes cannot be considered benign as they are potential precursors to non-3q8pq20 locally invasive, yet not metastatic oral SCC.

Indexed as

DNA Copy Number VariationsGenomic InstabilityCarcinoma, Squamous CellCohort StudiesComparative Genomic HybridizationDisease ProgressionFemaleHead and Neck NeoplasmsHumansLymphatic MetastasisMaleMiddle AgedMouth NeoplasmsPrecancerous ConditionsRisk

Identifiers

PMID22068658
PMCPMC3226754
OpenAlexW2148672839

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.