Evidence map›Paper›PMID 22068328›Full record

ArticleMolecular systems biology2011

Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae.

Jie Zhang, Stefania Vaga, Pramote Chumnanpuen, Rahul Kumar, Goutham N Vemuri, Ruedi Aebersold, Jens Nielsen

Abstract read
In one paragraph

Article in Molecular systems biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Kog1 Represses Lipid Accumulation inJournal of fungi (Basel, Switzerland) · 2026
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  4. The Power of Yeast.Yeast (Chichester, England) · 2025
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  5. bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Disruption of theFrontiers in microbiology · 2021
    Article
  16. Proteome analysis of xylose metabolism inBiotechnology for biofuels · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jie ZhangDepartment of Chemical and Biological Engineering, Chalmers University of Technology, Göteborg, Sweden.
Stefania Vaga
Pramote Chumnanpuen
Rahul Kumar
Goutham N Vemuri
Ruedi Aebersold
Jens Nielsen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nutrient sensing and coordination of metabolic pathways are crucial functions for all living cells, but details of the coordination under different environmental conditions remain elusive. We therefore undertook a systems biology approach to investigate the interactions between the Snf1 and the target of rapamycin complex 1 (TORC1) in Saccharomyces cerevisiae. We show that Snf1 regulates a much broader range of biological processes compared with TORC1 under both glucose- and ammonium-limited conditions. We also find that Snf1 has a role in upregulating the NADP(+)-dependent glutamate dehydrogenase (encoded by GDH3) under derepressing condition, and therefore may also have a role in ammonium assimilation and amino-acid biosynthesis, which can be considered as a convergence of Snf1 and TORC1 pathways. In addition to the accepted role of Snf1 in regulating fatty acid (FA) metabolism, we show that TORC1 also regulates FA metabolism, likely through modulating the peroxisome and β-oxidation. Finally, we conclude that direct interactions between Snf1 and TORC1 pathways are unlikely under nutrient-limited conditions and propose that TORC1 is repressed in a manner that is independent of Snf1.

Indexed as

Amino AcidsFatty AcidsGene Expression Regulation, FungalGlutamate DehydrogenaseProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSirolimusSystems BiologyTranscription FactorsTranscriptomeAmino AcidsFatty AcidsGlutamate DehydrogenaseProtein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsSirolimusSNF1-related protein kinasesTORC1 protein complex, S cerevisiaeTranscription Factors

Identifiers

PMID22068328
PMCPMC3261716

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.