Evidence map›Paper›PMID 22067153›Full record

ArticleBiophysical journal2011

Role of the KcsA channel cytoplasmic domain in pH-dependent gating.

Minako Hirano, Yukiko Onishi, Toshio Yanagida, Toru Ide

Abstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  11. Molecular determinants of tetramerization in the KcsA cytoplasmic domain.Protein science : a publication of the Protein Society · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Minako HiranoLaboratory for Cell Dynamics Observation, Quantitative Biology Center, RIKEN, Osaka, Japan.
Yukiko Onishi
Toshio Yanagida
Toru Ide

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The KcsA channel is a representative potassium channel that is activated by changes in pH. Previous studies suggested that the region that senses pH is entirely within its transmembrane segments. However, we recently revealed that the cytoplasmic domain also has an important role, because its conformation was observed to change dramatically in response to pH changes. Here, to investigate the effects of the cytoplasmic domain on pH-dependent gating, we made a chimera mutant channel consisting of the cytoplasmic domain of the KcsA channel and the transmembrane region of the MthK channel. The chimera showed a pH dependency similar to that of KcsA, indicating that the cytoplasmic domain can act as a pH sensor. To identify how this region detects pH, we substituted certain cytoplasmic domain amino acids that are normally negatively charged at pH 7 for neutral ones in the KcsA channels. These mutants opened independently of pH, suggesting that electrostatic charges have a major role in the cytoplasmic domain's ability to sense and respond to pH.

Indexed as

Ion Channel GatingAmino AcidsAmino Acid SequenceBacterial ProteinsCytoplasmHydrogen-Ion ConcentrationModels, BiologicalMolecular Sequence DataMutant ProteinsPotassium ChannelsProtein Structure, TertiaryStructure-Activity RelationshipAmino AcidsBacterial ProteinsMutant ProteinsPotassium Channelsprokaryotic potassium channel

Identifiers

PMID22067153
PMCPMC3207171

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.