Evidence map›Paper›PMID 22067149›Full record

ArticleBiophysical journal2011

Investigating circular dorsal ruffles through varying substrate stiffness and mathematical modeling.

Yukai Zeng, Tanny Lai, Cheng Gee Koh, Philip R LeDuc, K-H Chiam

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  13. Tissue stiffness regulates serine/arginine-rich protein-mediated splicing of the extra domain B-fibronectin isoform in tumors.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Article
  15. Article
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  17. Traveling waves in actin dynamics and cell motility.Current opinion in cell biology · 2013
    Review
  18. Article
  19. Review
  20. Functions and regulation of circular dorsal ruffles.Molecular and cellular biology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yukai ZengMechanical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Tanny Lai
Cheng Gee Koh
Philip R LeDuc
K-H Chiam
Agency for Science, Technology and Research · SGCarnegie Mellon University · USNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circular dorsal ruffles (CDRs) are transient actin-rich ringlike structures that form on the dorsal surface of growth-factor stimulated cells. However, the dynamics and mechanism of formation of CDRs are still unknown. It has been observed that CDR formation leads to stress fibers disappearing near the CDRs. Because stress fiber formation can be modified by substrate stiffness, we examined the effect of substrate stiffness on CDR formation by seeding NIH 3T3 fibroblasts on glass and polydimethylsiloxane substrates of varying stiffnesses from 20 kPa to 1800 kPa. We found that increasing substrate stiffness increased the lifetime of the CDRs. We developed a mathematical model of the signaling pathways involved in CDR formation to provide insight into this lifetime and size dependence that is linked to substrate stiffness via Rac-Rho antagonism. From the model, increasing stiffness raised mDia1-nucleated stress fiber formation due to Rho activation. The increased stress fibers present increased replenishment of the G-actin pool, therefore prolonging Arp2/3-nucleated CDR formation due to Rac activation. Negative feedback by WAVE-related RacGAP on Rac explained how CDR actin propagates as an excitable wave, much like wave propagation in other excitable medium, e.g., nerve signal transmission.

Indexed as

Models, BiologicalActinsAnimalsCell Surface ExtensionsComputer SimulationDimethylpolysiloxanesFeedback, PhysiologicalFibroblastsFocal Adhesion Protein-Tyrosine KinasesMiceNIH 3T3 CellsPlatelet-Derived Growth Factorrac GTP-Binding ProteinsReceptors, Platelet-Derived Growth Factorrho GTP-Binding ProteinsStress FibersActinsDimethylpolysiloxanesFocal Adhesion Protein-Tyrosine KinasesPlatelet-Derived Growth Factorrac GTP-Binding ProteinsReceptors, Platelet-Derived Growth Factorrho GTP-Binding Proteins

Identifiers

PMID22067149
PMCPMC3207170
OpenAlexW2063068992

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.