Evidence map›Paper›PMID 22066947›Full record

ArticleAIDS research and human retroviruses2012

Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension.

Sharilyn Almodovar, Rob Knight, Amanda A Allshouse, Sarah Roemer, Catherine Lozupone, Daniel McDonald, Jeremy Widmann, Norbert F Voelkel, Robert J Shelton, Edu B Suarez and 7 more

Abstract readValidation Study
In one paragraph

Article in AIDS research and human retroviruses, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Role of HIV-encoded proteins in cardiovascular disease.American journal of physiology. Cell physiology · 2025
    Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. The DNA Damage Response and HIV-Associated Pulmonary Arterial Hypertension.International journal of molecular sciences · 2020
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Maintaining lung health with longstanding HIV.Current opinion in infectious diseases · 2016
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Sharilyn AlmodovarCardiovascular Pulmonary Research Laboratory, University of Colorado Denver Anschutz Medical Campus, Aurora, Colorado 80045, USA. sharilyn.almodovar@ucdenver.edu
Rob Knight
Amanda A Allshouse
Sarah Roemer
Catherine Lozupone
Daniel McDonald
Jeremy Widmann
Norbert F Voelkel
Robert J Shelton
Edu B Suarez
Kenneth W Hammer
Cecile Goujard
Nicola Petrosillo
Gerald Simonneau
Priscilla Y Hsue
Marc Humbert
Sonia C Flores
University of Colorado Anschutz Medical Campus · USUniversity of California, San Francisco · USUniversity of Colorado Denver · US

Funding

U of Colorado Center for AIDS ResearchP30AI054907 · NIAID · UNIVERSITY OF COLORADO DENVER · PI MAWHINNEY-DELSON, SAMANTHA · 2003 to 2008
$9.6M
Translational Pulmonary Vascular Biology ProgramT32HL007171 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI Sonia Castro Flores, Tim Lahm · 1985 to 2026
$9.4M
Longitudinal studies of HIV-1 Nef in Pulmonary HypertensionR01HL090480 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI FLORES, SONIA CASTRO · 2007 to 2011
$3.9M
Pathobiology of HIV(SIV)-Induced Angioproliferative Pul*R01HL083491 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI FLORES, SONIA CASTRO · 2005 to 2009
$1.9M
NHLBI NIH HHS R01 HL083491NHLBI NIH HHS R01 HL901526NHLBI NIH HHS R01 HL90480NHLBI NIH HHS R01 HL90480-S1NHLBI NIH HHS T32-HL07171NIAID NIH HHS P30-AI054907
6 · The paper itself

Abstract

Severe pulmonary hypertension (PH) associated with vascular remodeling is a long-term complication of HIV infection (HIV-PH) affecting 1/200 infected individuals vs. 1/200,000 frequency in the uninfected population. Factors accounting for increased PH susceptibility in HIV-infected individuals are unknown. Rhesus macaques infected with chimeric SHIVnef virions but not with SIV display PH-like pulmonary vascular remodeling suggesting that HIV-Nef is associated with PH; these monkeys showed changes in nef sequences that correlated with pathogenesis after passage in vivo. We further examined whether HIV-nef alleles in HIV-PH subjects have signature sequences associated with the disease phenotype. We evaluated specimens from participants with and without HIV-PH from European Registries and validated results with samples collected as part of the Lung-HIV Studies in San Francisco. We found that 10 polymorphisms in nef were overrepresented in blood cells or lung tissue specimens from European HIV-PH individuals but significantly less frequent in HIV-infected individuals without PH. These polymorphisms mapped to known functional domains in Nef. In the validation cohort, 7/10 polymorphisms in the HIV-nef gene were confirmed; these polymorphisms arose independently from viral load, CD4(+) T cell counts, length of infection, and antiretroviral therapy status. Two out of 10 polymorphisms were previously reported in macaques with PH-like pulmonary vascular remodeling. Cloned recombinant Nef proteins from clinical samples down-regulated CD4, suggesting that these primary isolates are functional. This study offers new insights into the association between Nef polymorphisms in functional domains and the HIV-PH phenotype. The utility of these polymorphisms as predictors of PH should be examined in a larger population.

Indexed as

Acquired Immunodeficiency SyndromeAdultAnimalsCohort StudiesDisease Models, AnimalFemaleHIV-1HumansHypertension, PulmonaryMacaca mulattaMaleMolecular Sequence Datanef Gene Products, Human Immunodeficiency VirusPhylogenySan FranciscoSimian Acquired Immunodeficiency Syndromenef Gene Products, Human Immunodeficiency VirusNEF protein, SIVViral Regulatory and Accessory Proteins

Identifiers

PMID22066947
PMCPMC3358101
OpenAlexW2004312113

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.