Evidence map›Paper›PMID 22065774›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses.

Debasis Panda, Anshuman Das, Phat X Dinh, Sakthivel Subramaniam, Debasis Nayak, Nicholas J Barrows, James L Pearson, Jesse Thompson, David L Kelly, Istvan Ladunga and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Entry inhibitors as arenavirus antivirals.Frontiers in microbiology · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Debasis PandaSchool of Veterinary Medicine and Biomedical Sciences and Nebraska Center for Virology, University of Nebraska, Lincoln, NE 68583, USA.
Anshuman Das
Phat X Dinh
Sakthivel Subramaniam
Debasis Nayak
Nicholas J Barrows
James L Pearson
Jesse Thompson
David L Kelly
Istvan Ladunga
Asit K Pattnaik
University of Nebraska–Lincoln · USDuke Medical Center · USDuke University Hospital · USNational Institutes of Health · USUniversity of Nebraska Medical Center · US

Funding

ORGANIZATION AND FUNCTIONS OF CELLULAR STRUCTUREST32GM007184 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1985 to 2019
$18.2M
VSV RNA Transcription and ReplicationR01AI034956 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI PATTNAIK, ASIT K. · 2001 to 2005
$1.5M
NIAID NIH HHS R01 AI034956NIAID NIH HHS R01AI34956NIGMS NIH HHS T32 GM007184
6 · The paper itself

Abstract

Negative-strand (NS) RNA viruses comprise many pathogens that cause serious diseases in humans and animals. Despite their clinical importance, little is known about the host factors required for their infection. Using vesicular stomatitis virus (VSV), a prototypic NS RNA virus in the family Rhabdoviridae, we conducted a human genome-wide siRNA screen and identified 72 host genes required for viral infection. Many of these identified genes were also required for infection by two other NS RNA viruses, the lymphocytic choriomeningitis virus of the Arenaviridae family and human parainfluenza virus type 3 of the Paramyxoviridae family. Genes affecting different stages of VSV infection, such as entry/uncoating, gene expression, and assembly/release, were identified. Depletion of the proteins of the coatomer complex I or its upstream effectors ARF1 or GBF1 led to detection of reduced levels of VSV RNA. Coatomer complex I was also required for infection of lymphocytic choriomeningitis virus and human parainfluenza virus type 3. These results highlight the evolutionarily conserved requirements for gene expression of diverse families of NS RNA viruses and demonstrate the involvement of host cell secretory pathway in the process.

Indexed as

AnimalsCell LineDogsElectrophoresis, Polyacrylamide GelGene Expression ProfilingHost-Derived Cellular FactorsHumansImmunoblottingLymphocytic choriomeningitis virusParainfluenza Virus 3, HumanReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA InterferenceRNA, Small InterferingSecretory PathwayVesicular stomatitis Indiana virusHost-Derived Cellular FactorsRNA, Small Interfering

Identifiers

PMID22065774
PMCPMC3223448
OpenAlexW1993212909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.