Evidence map›Paper›PMID 22064863›Full record

ArticleNucleic acids research2012

EcoliWiki: a wiki-based community resource for Escherichia coli.

Brenley K McIntosh, Daniel P Renfro, Gwendowlyn S Knapp, Chanchala R Lairikyengbam, Nathan M Liles, Lili Niu, Amanda M Supak, Anand Venkatraman, Adrienne E Zweifel, Deborah A Siegele and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. GoSynthetic database tool to analyse natural and engineered molecular processes.Database : the journal of biological databases and curation · 2013
    Article
  14. Article
  15. EcoGene 3.0.Nucleic acids research · 2013
    Article
  16. Article
  17. Article
  18. Tetrahymena Genome Database Wiki: a community-maintained model organism database.Database : the journal of biological databases and curation · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Brenley K McIntoshDepartment of Biochemistry and Biophysics, Texas Agrilife Research, Texas A&M University College Station, TX 77843, USA.
Daniel P Renfro
Gwendowlyn S Knapp
Chanchala R Lairikyengbam
Nathan M Liles
Lili Niu
Amanda M Supak
Anand Venkatraman
Adrienne E Zweifel
Deborah A Siegele
James C Hu

Funding

EcoliHub2.0: A next-generation E. coli model organism resource (SRI Proposal ECU U24GM088849 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HU, JAMES C, SHERLOCK, GAVIN J · 2009 to 2012
$4.4M
Development of the www.EcoliCommunity.org Information ResourceU24GM077905 · NIGMS · PURDUE UNIVERSITY · PI WANNER, BARRY L · 2006 to 2009
$4.0M
NIGMS NIH HHS 1U24GM088849-01NIGMS NIH HHS U24 GM077905-01
6 · The paper itself

Abstract

EcoliWiki is the community annotation component of the PortEco (http://porteco.org; formerly EcoliHub) project, an online data resource that integrates information on laboratory strains of Escherichia coli, its phages, plasmids and mobile genetic elements. As one of the early adopters of the wiki approach to model organism databases, EcoliWiki was designed to not only facilitate community-driven sharing of biological knowledge about E. coli as a model organism, but also to be interoperable with other data resources. EcoliWiki content currently covers genes from five laboratory E. coli strains, 21 bacteriophage genomes, F plasmid and eight transposons. EcoliWiki integrates the Mediawiki wiki platform with other open-source software tools and in-house software development to extend how wikis can be used for model organism databases. EcoliWiki can be accessed online at http://ecoliwiki.net.

Indexed as

Databases, GeneticColiphagesEscherichia coliGenes, BacterialInternetInterspersed Repetitive SequencesMolecular Sequence AnnotationPlasmidsSoftwareSystems Integration

Identifiers

PMID22064863
PMCPMC3245172

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.