Evidence map›Paper›PMID 22064862›Full record

ArticleNucleic acids research2012

The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata.

Diane O Inglis, Martha B Arnaud, Jonathan Binkley, Prachi Shah, Marek S Skrzypek, Farrell Wymore, Gail Binkley, Stuart R Miyasato, Matt Simison, Gavin Sherlock

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed
9.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 202 citations in OpenAlex.

  1. Article
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  5. A COmBio · 2024
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  6. bioRxiv : the preprint server for biology · 2024
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  7. Review
  8. Reprogramming inInternational journal of molecular sciences · 2023
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  9. Article
  10. Article
  11. Article
  12. How to Use the Candida Genome Database.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  13. Article
  14. Review
  15. Review
  16. Phosphate in Virulence ofJournal of fungi (Basel, Switzerland) · 2020
    Review
  17. Article
  18. IdentifyingFrontiers in genetics · 2020
    Article
  19. Transcriptional responses ofNPJ biofilms and microbiomes · 2020
    Article
  20. Article

78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Diane O InglisDepartment of Genetics, Stanford University Medical School, Stanford, CA 94305-5120, USA.
Martha B Arnaud
Jonathan Binkley
Prachi Shah
Marek S Skrzypek
Farrell Wymore
Gail Binkley
Stuart R Miyasato
Matt Simison
Gavin Sherlock
Stanford University · US

Funding

Genomic Database for Candida AlbicansR01DE015873 · NIDCR · STANFORD UNIVERSITY · PI Gavin J Sherlock · 2004 to 2026
$11.7M
NIDCR NIH HHS R01 DE015873
6 · The paper itself

Abstract

The Candida Genome Database (CGD, http://www.candidagenome.org/) is an internet-based resource that provides centralized access to genomic sequence data and manually curated functional information about genes and proteins of the fungal pathogen Candida albicans and other Candida species. As the scope of Candida research, and the number of sequenced strains and related species, has grown in recent years, the need for expanded genomic resources has also grown. To answer this need, CGD has expanded beyond storing data solely for C. albicans, now integrating data from multiple species. Herein we describe the incorporation of this multispecies information, which includes curated gene information and the reference sequence for C. glabrata, as well as orthology relationships that interconnect Locus Summary pages, allowing easy navigation between genes of C. albicans and C. glabrata. These orthology relationships are also used to predict GO annotations of their products. We have also added protein information pages that display domains, structural information and physicochemical properties; bibliographic pages highlighting important topic areas in Candida biology; and a laboratory strain lineage page that describes the lineage of commonly used laboratory strains. All of these data are freely available at http://www.candidagenome.org/. We welcome feedback from the research community at candida-curator@lists.stanford.edu.

Indexed as

Databases, GeneticGenes, FungalGenome, FungalCandidaCandida albicansCandida glabrataFungal ProteinsGenomicsSoftwareFungal Proteins

Identifiers

PMID22064862
PMCPMC3245171
OpenAlexW2015593638

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.