Evidence map›Paper›PMID 22057276›Full record

ArticleThe Journal of biological chemistry2011

Nuclear localization of de novo thymidylate biosynthesis pathway is required to prevent uracil accumulation in DNA.

Amanda J MacFarlane, Donald D Anderson, Per Flodby, Cheryll A Perry, Robert H Allen, Sally P Stabler, Patrick J Stover

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 75 citations in OpenAlex.

  1. Review
  2. Dietary folic acid prevents peripheral neuropathy in mouse models of neural tube defects and type 2 diabetes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  6. DHFR2 RNA directly regulates dihydrofolate reductase and its expression level impacts folate one carbon metabolism.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
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  7. Tracing the Diverse Paths of One-Carbon Metabolism in Cancer and Beyond.Cold Spring Harbor perspectives in medicine · 2024
    Review
  8. Regulatory mechanisms of one-carbon metabolism enzymes.The Journal of biological chemistry · 2023
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Formate metabolism in health and disease.Molecular metabolism · 2020
    Review
  17. Review
  18. Cellular mechanisms underlyingDisease models & mechanisms · 2019
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  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Amanda J MacFarlaneDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853.
Donald D AndersonGraduate Field of Biochemistry, Molecular and Cell Biology, Cornell University, Ithaca, New York 14853.
Per FlodbyDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853.
Cheryll A PerryDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853.
Robert H AllenDepartment of Medicine and Division of Hematology, University of Colorado School of Medicine, Aurora, Colorado 80045.
Sally P StablerDepartment of Medicine and Division of Hematology, University of Colorado School of Medicine, Aurora, Colorado 80045.
Patrick J StoverDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853; Graduate Field of Biochemistry, Molecular and Cell Biology, Cornell University, Ithaca, New York 14853. Electronic address: pjs13@cornell.edu.
Cornell University · USUniversity of Colorado Denver · US

Funding

Homeostatic Regulation of Folate MetabolismR37DK058144 · NIDDK · TEXAS A&M AGRILIFE RESEARCH · PI STOVER, PATRICK J · 2012 to 2021
$3.7M
Homeostatic Regulation of Folate MetabolismR01DK058144 · NIDDK · CORNELL UNIVERSITY ITHACA · PI STOVER, PATRICK J · 2002 to 2010
$2.9M
NIDDK NIH HHS DK58144NIDDK NIH HHS R01 DK058144NIDDK NIH HHS R37 DK058144
6 · The paper itself

Abstract

Uracil accumulates in DNA as a result of impaired folate-dependent de novo thymidylate biosynthesis, a pathway composed of the enzymes serine hydroxymethyltransferase (SHMT), thymidylate synthase (TYMS), and dihydrofolate reductase. In G1, this pathway is present in the cytoplasm and at S phase undergoes small ubiquitin-like modifier-dependent translocation to the nucleus. It is not known whether this pathway functions in the cytoplasm, nucleus, or both in vivo. SHMT1 generates 5,10-methylenetetrahydrofolate for de novo thymidylate biosynthesis, a limiting step in the pathway, but also tightly binds 5-methyltetrahydrofolate in the cytoplasm, a required cofactor for homocysteine remethylation. Overexpression of SHMT1 in cell cultures inhibits folate-dependent homocysteine remethylation and enhances thymidylate biosynthesis. In this study, the impact of increased Shmt1 expression on folate-mediated one-carbon metabolism was determined in mice that overexpress the Shmt1 cDNA (Shmt1tg+ mice). Compared with wild type mice, Shmt1tg+ mice exhibited elevated SHMT1 and TYMS protein levels in tissues and evidence for impaired homocysteine remethylation but surprisingly exhibited depressed levels of nuclear SHMT1 and TYMS, lower rates of nuclear de novo thymidylate biosynthesis, and a nearly 10-fold increase in uracil content in hepatic nuclear DNA when fed a folate- and choline-deficient diet. These results demonstrate that SHMT1 and TYMS localization to the nucleus is essential to prevent uracil accumulation in nuclear DNA and indicate that SHMT1-mediated nuclear de novo thymidylate synthesis is critical for maintaining DNA integrity.

Indexed as

Active Transport, Cell NucleusAnimalsCell NucleusDNAGlycine HydroxymethyltransferaseMiceMice, TransgenicOligonucleotide Array Sequence AnalysisPyridoxal PhosphatePyrimidinesS PhaseThymidylate SynthaseTissue DistributionTransgenesUracilDNAGlycine HydroxymethyltransferasePyridoxal PhosphatepyrimidinePyrimidinesShmt1 protein, mouseThymidylate SynthaseUracil

Identifiers

PMID22057276
PMCPMC3243516
OpenAlexW1971352608

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.