Evidence map›Paper›PMID 22057268›Full record

ArticleThe Journal of biological chemistry2012

Identification of gene encoding Plasmodium knowlesi phosphatidylserine decarboxylase by genetic complementation in yeast and characterization of in vitro maturation of encoded enzyme.

Jae-Yeon Choi, Yoann Augagneur, Choukri Ben Mamoun, Dennis R Voelker

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Proteolytic Control of Lipid Metabolism.ACS chemical biology · 2019
    Review
  4. Article
  5. Mitochondrial Proteolysis and Metabolic Control.Cold Spring Harbor perspectives in biology · 2019
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Phosphatidylethanolamine Metabolism in Health and Disease.International review of cell and molecular biology · 2016
    Review
  15. Article
  16. Article
  17. Article
  18. Plasmodium falciparum phosphoethanolamine methyltransferase is essential for malaria transmission.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jae-Yeon ChoiBasic Science Section, Department of Medicine, National Jewish Health, Denver, Colorado 80206.
Yoann AugagneurDepartment of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, Connecticut 06520.
Choukri Ben MamounDepartment of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, Connecticut 06520.
Dennis R VoelkerBasic Science Section, Department of Medicine, National Jewish Health, Denver, Colorado 80206. Electronic address: voelkerd@njhealth.org.
National Jewish Health · USYale University · US

Funding

Phospholipid Dynamics in Membrane AssemblyR37GM032453 · NIGMS · NATIONAL JEWISH HEALTH · PI VOELKER, DENNIS R. · 2003 to 2012
$3.7M
PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR37GM032543 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUSTAMANTE, CARLOS JOSE · 1999 to 2008
$2.4M
NIGMS NIH HHS 5R37 GM32543NIGMS NIH HHS R37 GM032453NIGMS NIH HHS R37 GM032543
6 · The paper itself

Abstract

The 23-megabase genome of Plasmodium falciparum, the causative agent of severe human malaria, contains ∼5300 genes, most of unknown function or lacking homologs in other organisms. Identification of these gene functions will help in the discovery of novel targets for the development of antimalarial drugs and vaccines. The P. falciparum genome is unusually A+T-rich, which hampers cloning and expressing these genes in heterologous systems for functional analysis. The large repertoire of genetic tools available for Saccharomyces cerevisiae makes this yeast an ideal system for large scale functional complementation analyses of parasite genes. Here, we report the construction of a cDNA library from P. knowlesi, which has a lower A+T content compared with P. falciparum. This library was applied in a yeast complementation assay to identify malaria genes involved in the decarboxylation of phosphatidylserine. Transformation of a psd1Δpsd2Δdpl1Δ yeast strain, defective in phosphatidylethanolamine synthesis, with the P. knowlesi library led to identification of a new parasite phosphatidylserine decarboxylase (PkPSD). Unlike phosphatidylserine decarboxylase enzymes from other eukaryotes that are tightly associated with membranes, the PkPSD enzyme expressed in yeast was equally distributed between membrane and soluble fractions. In vitro studies reveal that truncated forms of PkPSD are soluble and undergo auto-endoproteolytic maturation in a phosphatidylserine-dependent reaction that is inhibited by other anionic phospholipids. This study defines a new system for probing the function of Plasmodium genes by library-based genetic complementation and its usefulness in revealing new biochemical properties of encoded proteins.

Indexed as

Genetic Complementation TestProtein Processing, Post-TranslationalAmino Acid SequenceAnimalsCarboxy-LyasesCattleDihydroxyphenylalanineEscherichia coliGene LibraryMolecular Sequence DataPhosphatidylglycerolsPhosphatidylinositolsPlasmodium knowlesiSaccharomyces cerevisiae1,2-dioleoyl-sn-glycero-3-phosphoglycerolCarboxy-LyasesDihydroxyphenylalaninePhosphatidylglycerolsPhosphatidylinositolsphosphatidylserine decarboxylase

Identifiers

PMID22057268
PMCPMC3249073
OpenAlexW2064163449

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.