Evidence map›Paper›PMID 22053088›Full record

ArticleNucleic acids research2012

An unstructured 5'-coding region of the prfA mRNA is required for efficient translation.

Edmund Loh, Faranak Memarpour, Karolis Vaitkevicius, Birgitte H Kallipolitis, Jörgen Johansson, Berit Sondén

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  7. Microorganisms · 2022
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  10. Regulation ofMicrobiology spectrum · 2019
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  11. Noncoding RNA.Microbiology spectrum · 2019
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  12. RNA Thermometers in Bacterial Pathogens.Microbiology spectrum · 2018
    Review
  13. Identification and Characterization of aFrontiers in microbiology · 2018
    Article
  14. Listeriolysin O: from bazooka to Swiss army knife.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. How Listeria monocytogenes organizes its surface for virulence.Frontiers in cellular and infection microbiology · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Edmund LohDepartment of Molecular Biology, Laboratory for Molecular Infection Medicine Sweden, Umeå Centre for Microbial Research, Umeå University, 90187 Umeå, Sweden.
Faranak Memarpour
Karolis Vaitkevicius
Birgitte H Kallipolitis
Jörgen Johansson
Berit Sondén
University of Southern Denmark · DKUmeå University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Expression of virulence factors in the human bacterial pathogen Listeria monocytogenes is almost exclusively regulated by the transcriptional activator PrfA. The translation of prfA is controlled by a thermosensor located in the 5'-untranslated RNA (UTR), and is high at 37°C and low at temperatures <30°C. In order to develop a thermoregulated translational expression system, the 5'-UTR and different lengths of the prfA-coding sequences were placed in front of lacZ. When expressed in Escherichia coli, the β-galactosidase expression was directly correlated to the length of the prfA-coding mRNA lying in front of lacZ. A similar effect was detected with gfp as a reporter gene in both L. monocytogenes and E. coli, emphasizing the requirement of the prfA-coding RNA for maximal expression. In vitro transcription/translation and mutational analysis suggests a role for the first 20 codons of the native prfA-mRNA for maximal expression. By toe-print and RNA-probing analysis, a flexible hairpin-loop located immediately downstream of the start-codon was shown to be important for ribosomal binding. The present work determines the importance of an unstructured part of the 5'-coding region of the prfA-mRNA for efficient translation.

Indexed as

CodonProtein BiosynthesisBacterial ProteinsGenes, ReporterListeria monocytogenesMutationNucleic Acid ConformationPeptide Termination FactorsProtein StabilityRibosomesRNA, MessengerRNA StabilityBacterial ProteinsCodonPeptide Termination FactorsPrfA protein, Listeria monocytogenesRNA, Messenger

Identifiers

PMID22053088
PMCPMC3287183
OpenAlexW1989985977

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.