Evidence map›Paper›PMID 22052802›Full record

ArticleHead & neck2012

Gene-environment interactions of novel variants associated with head and neck cancer.

Caihua Liang, Carmen J Marsit, E Andres Houseman, Rondi Butler, Heather H Nelson, Michael D McClean, Karl T Kelsey

Abstract read
In one paragraph

Article in Head & neck, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Association ofBioscience reports · 2019
    Pooled it
  2. Article
  3. Helicase HELQ: Molecular Characters Fit for DSB Repair Function.International journal of molecular sciences · 2024
    Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Head and neck cancer: causes, prevention and treatment.Brazilian journal of otorhinolaryngology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Caihua LiangDepartment of Community Health, Brown University, Providence, Rhode Island, USA.
Carmen J Marsit
E Andres Houseman
Rondi Butler
Heather H Nelson
Michael D McClean
Karl T Kelsey
Brown University · USBoston University · USUniversity of Minnesota · US

Funding

The Boston Collaborative Oral Cancer StudyR01CA078609 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI KELSEY, KARL TIMOTHY · 1999 to 2010
$5.3M
Patterns of Somatic Gene Alterations in Oral CancerR01CA100679 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI KELSEY, KARL TIMOTHY · 2004 to 2012
$2.6M
NCI NIH HHS R01 CA078609NCI NIH HHS R01 CA100679
6 · The paper itself

Abstract

backgroundA genome-wide association study for upper aerodigestive tract cancers identified 19 candidate single-nucleotide polymorphisms (SNPs). We used these SNPs to investigate the potential gene-gene and gene-environment interactions in head and neck squamous cell carcinoma (HNSCC) risk.

methodsThe 19 variants were genotyped using Taqman assays among 575 cases and 676 controls in our population-based case-control study.

resultsA restricted cubic spline model suggested both ADH1B and HEL308 modified the association between smoking pack-years and HNSCC. Classification and regression tree analysis demonstrated a higher-order interaction between smoking status, ADH1B, FLJ13089, and FLJ35784 in HNSCC risk. Compared with ever smokers carrying ADH1B T/C+T/T genotypes, smokers carrying ADH1B C/C genotype and FLJ13089 A/G+A/A genotypes had the highest risk of HNSCC (odds ratio = 1.84).

conclusionsOur results suggest that the risk associated with these variants may be specifically important among specific exposure groups.

Indexed as

Gene-Environment InteractionPolymorphism, Single NucleotideAlcohol DehydrogenaseCarcinoma, Squamous CellCase-Control StudiesDNA HelicasesFemaleGenotypeHead and Neck NeoplasmsHumansLogistic ModelsMaleMiddle AgedRisk AssessmentSmokingADH1B protein, humanAlcohol DehydrogenaseDNA HelicasesHELQ protein, human

Identifiers

PMID22052802
PMCPMC3662053
OpenAlexW2033384149

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.