Evidence map›Paper›PMID 22051697›Full record

Trial reportThe Journal of allergy and clinical immunology2012

Genome-wide association study reveals class I MHC-restricted T cell-associated molecule gene (CRTAM) variants interact with vitamin D levels to affect asthma exacerbations.

Rose Du, Augusto A Litonjua, Kelan G Tantisira, Jessica Lasky-Su, Shamil R Sunyaev, Barbara J Klanderman, Juan C Celedón, Lydiana Avila, Manuel E Soto-Quiros, Scott T Weiss

Open access · bronzeAbstract readMulticenter StudyRandomized Controlled Trial
In one paragraph

Trial report in The Journal of allergy and clinical immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 57 citations in OpenAlex.

  1. Vitamin D3 suppresses NLRP3 inflammasome pathway and enhances steroid sensitivity in a neutrophilic steroid hyporesponsive asthma mouse model.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2025
    Article
  2. Review
  3. The Influence of HLA Alleles on the Affective Distress Profile.International journal of environmental research and public health · 2022
    Article
  4. Review
  5. Review
  6. Novel eosinophilic gene expression networks associated with IgE in two distinct asthma populations.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2018
    Article
  7. Article
  8. Review
  9. Genetic Signatures of Asthma Exacerbation.Allergy, asthma & immunology research · 2017
    Review
  10. Personalized management of asthma exacerbations: lessons from genetic studies.Expert review of precision medicine and drug development · 2016
    Article
  11. Article
  12. Article
  13. Vitamin D and the development of allergic disease: how important is it?Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2015
    Review
  14. Article
  15. Peripheral blood T cells and neutrophils from asthma patients express class-I MHC-restricted T cell-associated molecule.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2014
    Article
  16. Review
  17. Genetics of asthma susceptibility and severity.Clinics in chest medicine · 2012
    Review
  18. Vitamin D Insufficiency and Asthma in a US Nationwide Study.The journal of allergy and clinical immunology. In practice
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Rose DuChanning Laboratory, Brigham and Women's Hospital, Boston, Mass 02115, USA. rdu@partners.org
Augusto A Litonjua
Kelan G Tantisira
Jessica Lasky-Su
Shamil R Sunyaev
Barbara J Klanderman
Juan C Celedón
Lydiana Avila
Manuel E Soto-Quiros
Scott T Weiss
Brigham and Women's Hospital · USHarvard University · USHospital Nacional de Niños · CR

Funding

THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
The Genetic Epidemiology of Asthma in Costa RicaR37HL066289 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2015
$14.6M
SYSTEMS APPROACHES TO THE EPIDEMIOLOGY, GENETICS AND GENOMICS OF LUNG DISEASEST32HL007427 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI DAWN L DEMEO, Edwin K Silverman · 1985 to 2026
$13.6M
Statistical GeneticsP01HL083069 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2011
$12.2M
Genetics and Gene Expression Profiling in AsthmaR01HL086601 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI RABY, BENJAMIN ALEXANDER · 2007 to 2015
$6.8M
INTEGRATIVE PHARMACOGENOMICS OF LEUKOTRIENE INHIBITION IN ASTHMAR01HL092197 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2009 to 2013
$3.6M
CAMP Continuation Study/Phase 3U01HL075419 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FUHLBRIGGE, ANNE L · 2003 to 2010
$2.0M
On the Genetic Determinants of Asthma and ObesityR00HL096840 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LASKY-SU, JESSICA A · 2010 to 2012
$746k
Vitamin D in Obstructive Lung DiseasesR21HL089842 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LITONJUA, AUGUSTO A · 2007 to 2008
$481k
NHLBI NIH HHS P01 HL083069NHLBI NIH HHS R00 HL096840NHLBI NIH HHS R01 HL086601NHLBI NIH HHS R01 HL092197NHLBI NIH HHS R01HL092197NHLBI NIH HHS R21 HL089842NHLBI NIH HHS R21HL089842NHLBI NIH HHS R37 HL066289NHLBI NIH HHS T32 HL007427NHLBI NIH HHS T32 HL07427NHLBI NIH HHS U01 HL065899NHLBI NIH HHS U01 HL075419NHLBI NIH HHS U01 HL65899
6 · The paper itself

Abstract

backgroundIt has recently been shown that vitamin D deficiency can increase asthma development and severity and that variations in vitamin D receptor genes are associated with asthma susceptibility.

objectiveWe sought to find genetic factors that might interact with vitamin D levels to affect the risk of asthma exacerbation.

methodsWe conducted a genome-wide study of gene-vitamin D interaction on asthma exacerbations using population-based and family-based approaches on 403 subjects and trios from the Childhood Asthma Management Program. Twenty-three polymorphisms with significant interactions were studied in a replication analysis in 584 children from a Costa Rican cohort.

resultsWe identified 3 common variants in the class I MHC-restricted T cell-associated molecule gene (CRTAM) that were associated with an increased rate of asthma exacerbations based on the presence of a low circulating vitamin D level. These results were replicated in a second independent population (unadjusted combined interaction, P = .00028-.00097; combined odds ratio, 3.28-5.38). One variant, rs2272094, is a nonsynonymous coding polymorphism of CRTAM. Functional studies on cell lines confirmed the interaction of vitamin D and rs2272094 on CRTAM expression. CRTAM is highly expressed in activated human CD8(+) and natural killer T cells, both of which have been implicated in asthmatic patients.

conclusionThe findings highlight an important gene-environment interaction that elucidates the role of vitamin D and CD8(+) and natural killer T cells in asthma exacerbation in a genome-wide gene-environment interaction study that has been replicated in an independent population. The results suggest the potential importance of maintaining adequate vitamin D levels in subsets of high-risk asthmatic patients.

Indexed as

AsthmaChildDouble-Blind MethodFemaleGene-Environment InteractionGene ExpressionGenome-Wide Association StudyGenotypeHumansImmunoglobulinsMalePolymorphism, Single NucleotideVitamin Dclass-I restricted T cell-associated moleculeImmunoglobulinsVitamin D

Identifiers

PMID22051697
PMCPMC3360942
OpenAlexW2011588217

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.