ArticleAIDS research and human retroviruses2012
Phylogenetic analysis of the Latvian HIV-1 epidemic.
Article in AIDS research and human retroviruses, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.
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Who cites it
10 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Defining HIV-1 transmission clusters based on sequence data.AIDS (London, England) · 2017Pooled it
- Phylodynamic Inference across Epidemic Scales.Molecular biology and evolution · 2017Article
- Monitoring quality and coverage of harm reduction services for people who use drugs: a consensus study.Harm reduction journal · 2017Article
- The global spread of HIV-1 subtype B epidemic.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016Article
- Overview of HIV molecular epidemiology among people who inject drugs in Europe and Asia.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016Review
- Dynamic Variation in Sexual Contact Rates in a Cohort of HIV-Negative Gay Men.American journal of epidemiology · 2015Observational
- Ensuring privacy in the study of pathogen genetics.The Lancet. Infectious diseases · 2014Review
- Phylogenetic inferences on HIV-1 transmission: implications for the design of prevention and treatment interventions.AIDS (London, England) · 2013Review
- Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013Article
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Abstract
The Latvian HIV-1 outbreak among intravenous drug users (IDUs) in 1997-1998 involved subtype A1. To obtain a more complete picture of the Latvian HIV-1 epidemic, 315 HIV-1-infected patients diagnosed in 1990-2005 representing different transmission groups and geographic regions were phylogenetically characterized using env V3 and gag p17 sequences. Subtypes A1 and B infections were found in 76% and 22% of the patients, respectively. The subtype A1 sequences formed one large cluster, which also included sequences from other parts of the former Soviet Union (FSU), whereas most subtype B sequences formed three distinct clusters. We estimated that subtype A1 was introduced from FSU around 1997 and initially spread explosively among IDUs in Riga. A recent increase of heterosexually infected persons did not form a separate subepidemic, but had multiple interactions with the IDU epidemic. Subtype B was introduced before the collapse of the Soviet Union and primarily has spread among men who have sex with men.
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