Evidence map›Paper›PMID 22049084›Full record

Trial reportThe Journal of biological chemistry2012

High temperature requirement factor A1 (HTRA1) gene regulates angiogenesis through transforming growth factor-β family member growth differentiation factor 6.

Li Zhang, Siok Lam Lim, Hongjun Du, Ming Zhang, Igor Kozak, Gregory Hannum, Xiaolei Wang, Hong Ouyang, Guy Hughes, Ling Zhao and 14 more

Open access · hybridAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 92 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. An Association between HTRA1 and TGF-βJournal of clinical medicine · 2024
    Article
  6. First Trimester Placental Biomarkers for Pregnancy Outcomes.International journal of molecular sciences · 2024
    Review
  7. Review
  8. Article
  9. HTRA1 in Placental Cell Models: A Possible Role in Preeclampsia.Current issues in molecular biology · 2023
    Article
  10. Review
  11. Review
  12. Article
  13. Observational
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 3 countries.

Li ZhangMolecular Medicine Research Center and Department of Ophthalmology, West China Hospital, Sichuan University, Chengdu 610041, China.
Siok Lam Lim
Hongjun Du
Ming Zhang
Igor Kozak
Gregory Hannum
Xiaolei Wang
Hong Ouyang
Guy Hughes
Ling Zhao
Xuemei Zhu
Clara Lee
Zhiguang Su
Xinrong Zhou
Robert Shaw
Dongho Geum
Xinran Wei
Jin Zhu
Trey Ideker
Chio Oka
Ningli Wang
Zhenglin Yang
Peter X Shaw
Kang Zhang
University of California, San Diego · USSichuan University · CNBeijing Tongren Hospital · CNNara Institute of Science and Technology · JPSichuan Academy of Medical Sciences & Sichuan Provincial People's Hospital · CNWest China Hospital of Sichuan University · CN

Funding

Regeneration of Retinal Neurons by Chemically Induced Reprogramming of Muller GliR01EY021374 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DING, SHENG, REH, THOMAS A · 2010 to 2014
$4.2M
Genetics and Functional Studies of Age-Related Macular DegenerationR01EY018660 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHANG, KANG · 2008 to 2012
$2.0M
HTRA1 and Age-Related Macular DegenerationI01BX001898 · VA · VA SAN DIEGO HEALTHCARE SYSTEM · PI ZHANG, KANG · 2014 to 2017
–
BLRD VA I01 BX001898NEI NIH HHS R01 EY018660NEI NIH HHS R01 EY021374
6 · The paper itself

Abstract

Genome-wide association study (GWAS) has identified genetic variants in the promoter region of the high temperature requirement factor A1 (HTRA1) gene associated with age-related macular degeneration (AMD). As a secreted serine protease, HTRA1 has been reported to interact with members of the transforming growth factor-β (TGF-β) family and regulate their signaling pathways. Growth differentiation factor 6 (GDF6), a member of the TGF-β family, is involved in ectoderm patterning and eye development. Mutations in GDF6 have been associated with abnormal eye development that may result in microphthalmia and anophthalmia. In this report, we identified a single nucleotide polymorphism (SNP) rs6982567 A/G near the GDF6 gene that is significantly associated with AMD (p value = 3.54 × 10(-8)). We demonstrated that the GDF6 AMD risk allele (rs6982567 A) is associated with decreased expression of the GDF6 and increased expression of HTRA1. Similarly, the HTRA1 AMD risk allele (rs10490924 T) is associated with decreased GDF6 and increased HTRA1 expression. We observed decreased vascular development in the retina and significant up-regulation of GDF6 gene in the RPE layer, retinal and brain tissues in HTRA1 knock-out (htra1(-/-)) mice as compared with the wild-type counterparts. Furthermore, we showed enhanced SMAD signaling in htra1(-/-) mice. Our data suggests a critical role of HTRA1 in the regulation of angiogenesis via TGF-β signaling and identified GDF6 as a novel disease gene for AMD.

Indexed as

Polymorphism, Single NucleotideAgedAllelesAnimalsCohort StudiesFemaleGene Expression RegulationGrowth Differentiation Factor 6High-Temperature Requirement A Serine Peptidase 1HumansMacular DegenerationMaleMiceMice, KnockoutMiddle AgedNeovascularization, PathologicGDF6 protein, humanGdf6 protein, mouseGrowth Differentiation Factor 6High-Temperature Requirement A Serine Peptidase 1HTRA1 protein, humanHtrA1 protein, mouseSerine EndopeptidasesSmad Proteins

Identifiers

PMID22049084
PMCPMC3256864
OpenAlexW2128403978

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.