Evidence map›Paper›PMID 22049080›Full record

ArticleThe Journal of biological chemistry2012

Anion activation site of insulin-degrading enzyme.

Nicholas Noinaj, Eun Suk Song, Sonia Bhasin, Benjamin J Alper, Walter K Schmidt, Louis B Hersh, David W Rodgers

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  11. Article
  12. Targeting Insulin-Degrading Enzyme to Treat Type 2 Diabetes Mellitus.Trends in endocrinology and metabolism: TEM · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Conformational states and recognition of amyloidogenic peptides of human insulin-degrading enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nicholas NoinajDepartment of Molecular and Cellular Biochemistry and the Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536.
Eun Suk SongDepartment of Molecular and Cellular Biochemistry and the Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536.
Sonia BhasinDepartment of Molecular and Cellular Biochemistry and the Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536.
Benjamin J AlperDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602.
Walter K SchmidtDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602.
Louis B HershDepartment of Molecular and Cellular Biochemistry and the Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536. Electronic address: lhersh@uky.edu.
David W RodgersDepartment of Molecular and Cellular Biochemistry and the Center for Structural Biology, University of Kentucky, Lexington, Kentucky 40536. Electronic address: david.rodgers@uky.edu.
University of Kentucky · USUniversity of Georgia · US

Funding

UNDERSTANDING THE MOLECULAR BASIS OF EPIGENETIC TRANSCRIPTIONAL SILENCINGP20RR020171 · NCRR · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2004 to 2011
$16.5M
Training in Drug Abuse Related Research.T32DA016176 · NIDA · UNIVERSITY OF KENTUCKY · PI DWOSKIN, LINDA P · 2004 to 2020
$4.0M
DEGRADATION OF OPIOID PEPTIDESR01DA002243 · NIDA · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 1985 to 2011
$3.4M
Role of Rce1p in the Biogenesis of CaaX ProteinsR01GM067092 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI SCHMIDT, WALTER K · 2005 to 2009
$1.2M
Neuropeptidase FunctionR01NS038041 · NINDS · UNIVERSITY OF KENTUCKY · PI RODGERS, DAVID W · 2001 to 2004
$1.0M
Neuropeptidase FunctionR56NS038041 · NINDS · UNIVERSITY OF KENTUCKY · PI RODGERS, DAVID W · 2007 to 2007
$330k
NCRR NIH HHS P20 RR020171NCRR NIH HHS P20 RR20171NIDA NIH HHS DA016176NIDA NIH HHS DA02243NIDA NIH HHS R01 DA002243NIDA NIH HHS T32 DA016176NIGMS NIH HHS GM067092NIGMS NIH HHS R01 GM067092NINDS NIH HHS NS38041NINDS NIH HHS R01 NS038041NINDS NIH HHS R56 NS038041
6 · The paper itself

Abstract

Insulin-degrading enzyme (IDE) (insulysin) is a zinc metallopeptidase that metabolizes several bioactive peptides, including insulin and the amyloid β peptide. IDE is an unusual metallopeptidase in that it is allosterically activated by both small peptides and anions, such as ATP. Here, we report that the ATP-binding site is located on a portion of the substrate binding chamber wall arising largely from domain 4 of the four-domain IDE. Two variants having residues in this site mutated, IDEK898A,K899A,S901A and IDER429S, both show greatly decreased activation by the polyphosphate anions ATP and PPPi. IDEK898A,K899A,S901A is also deficient in activation by small peptides, suggesting a possible mechanistic link between the two types of allosteric activation. Sodium chloride at high concentrations can also activate IDE. There are no observable differences in average conformation between the IDE-ATP complex and unliganded IDE, but regions of the active site and C-terminal domain do show increased crystallographic thermal factors in the complex, suggesting an effect on dynamics. Activation by ATP is shown to be independent of the ATP hydrolysis activity reported for the enzyme. We also report that IDEK898A,K899A,S901A has reduced intracellular function relative to unmodified IDE, consistent with a possible role for anion activation of IDE activity in vivo. Together, the data suggest a model in which the binding of anions activates by reducing the electrostatic attraction between the two halves of the enzyme, shifting the partitioning between open and closed conformations of IDE toward the open form.

Indexed as

Adenosine TriphosphateAnimalsAnionsBinding SitesCell LineCrystallography, X-RayEnzyme ActivationInsulysinIntracellular SpaceModels, MolecularMutagenesisMutationProtein ConformationRatsAdenosine TriphosphateAnionsInsulysin

Identifiers

PMID22049080
PMCPMC3249101
OpenAlexW2153733683

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.