Evidence map›Paper›PMID 22046377›Full record

ArticlePloS one2011

Crystal structure of outer membrane protein NMB0315 from Neisseria meningitidis.

Xiangyu Wang, Xue Yang, Chunting Yang, Zhenhua Wu, Honglin Xu, Yuequan Shen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Structural Characterization of EnpA D,L-Endopeptidase fromInternational journal of molecular sciences · 2021
    Article
  5. Structural basis of peptidoglycan endopeptidase regulation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Structure of Csd3 from Helicobacter pylori, a cell shape-determining metallopeptidase.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
  12. Structure of Neisseria meningitidis lipoprotein GNA1162.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xiangyu WangState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin, China.
Xue Yang
Chunting Yang
Zhenhua Wu
Honglin Xu
Yuequan Shen
Nankai University · CNNational Vaccine and Serum Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NMB0315 is an outer membrane protein of Neisseria meningitidis serogroup B (NMB) and a potential candidate for a broad-spectrum vaccine against meningococcal disease. The crystal structure of NMB0315 was solved by single-wavelength anomalous dispersion (SAD) at a resolution of 2.4 Å and revealed to be a lysostaphin-type peptidase of the M23 metallopeptidase family. The overall structure consists of three well-separated domains and has no similarity to any previously published structure. However, only the topology of the carboxyl-terminal domain is highly conserved among members of this family, and this domain is a zinc-dependent catalytic unit. The amino-terminal domain of the structure blocks the substrate binding pocket in the carboxyl-terminal domain, indicating that the wild-type full-length protein is in an inactive conformational state. Our studies improve the understanding of the catalytic mechanism of M23 metallopeptidases.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsBinding SitesBiocatalysisCrystallography, X-RayMetalloproteasesModels, MolecularMolecular Sequence DataNeisseria meningitidisNeisseria meningitidis, Serogroup BProtein Structure, TertiarySequence AlignmentStructural Homology, ProteinZincBacterial Outer Membrane ProteinsMetalloproteasesZinc

Identifiers

PMID22046377
PMCPMC3202590
OpenAlexW2093261162

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.