Evidence map›Paper›PMID 22046361›Full record

ArticlePloS one2011

Evidence for retrogene origins of the prion gene family.

Sepehr Ehsani, Renzhu Tao, Cosmin L Pocanschi, Hezhen Ren, Paul M Harrison, Gerold Schmitt-Ulms

Abstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Probing the origin of prion protein misfolding via reconstruction of ancestral proteins.Protein science : a publication of the Protein Society · 2022
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Biochemical insight into the prion protein family.Frontiers in cell and developmental biology · 2015
    Review
  13. Review
  14. Article
  15. The prion protein family: a view from the placenta.Frontiers in cell and developmental biology · 2014
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sepehr EhsaniTanz Centre for Research in Neurodegenerative Diseases, University of Toronto, Toronto, Ontario, Canada. sepehr.ehsani@utoronto.ca
Renzhu Tao
Cosmin L Pocanschi
Hezhen Ren
Paul M Harrison
Gerold Schmitt-Ulms

Funding

CIHR MOP-74734Medical Research Council MC_G1000734Wellcome Trust 089703
6 · The paper itself

Abstract

The evolutionary origin of prion genes, only known to exist in the vertebrate lineage, had remained elusive until recently. Following a lead from interactome investigations of the murine prion protein, our previous bioinformatic analyses revealed the evolutionary descent of prion genes from an ancestral ZIP metal ion transporter. However, the molecular mechanism of evolution remained unexplored. Here we present a computational investigation of this question based on sequence, intron-exon, synteny and pseudogene analyses. Our data suggest that during the emergence of metazoa, a cysteine-flanked core domain was modularly inserted, or arose de novo, in a preexisting ZIP ancestor gene to generate a prion-like ectodomain in a subbranch of ZIP genes. Approximately a half-billion years later, a genomic insertion of a spliced transcript coding for such a prion-like ZIP ectodomain may have created the prion founder gene. We document that similar genomic insertions involving ZIP transcripts, and probably relying on retropositional elements, have indeed occurred more than once throughout evolution.

Indexed as

Evolution, MolecularAnimalsCation Transport ProteinsComputational BiologyExonsIntronsMutagenesis, InsertionalPrionsPseudogenesRetroelementsRNA SplicingCation Transport ProteinsPrionsRetroelements

Identifiers

PMID22046361
PMCPMC3203146

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.