Evidence map›Paper›PMID 22045806›Full record

ArticleThe Journal of biological chemistry2011

Pathway profiling in Mycobacterium tuberculosis: elucidation of cholesterol-derived catabolite and enzymes that catalyze its metabolism.

Suzanne T Thomas, Brian C VanderVen, David R Sherman, David G Russell, Nicole S Sampson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
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  6. Targeted Mutagenesis of Mycobacterium Strains by Homologous Recombination.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
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  8. Pathogens (Basel, Switzerland) · 2022
    Article
  9. Article
  10. The unusual convergence of steroid catabolic pathways inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  15. Reductive Power Generated byFrontiers in cellular and infection microbiology · 2021
    Article
  16. Post-translational Succinylation ofACS infectious diseases · 2020
    Article
  17. Article
  18. Biochemistry · 2019
    Article
  19. Article
  20. The steroid side-chain-cleaving aldolase Ltp2-ChsH2The Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Suzanne T ThomasDepartment of Chemistry, Stony Brook University, Stony Brook, New York 11794.
Brian C VanderVenDepartment of Microbiology and Immunology, Cornell University, Ithaca, New York 14853, and. Electronic address: bcv8@cornell.edu.
David R ShermanSeattle Biomedical Research Institute, Seattle, Washington 98109.
David G RussellDepartment of Microbiology and Immunology, Cornell University, Ithaca, New York 14853, and.
Nicole S SampsonDepartment of Chemistry, Stony Brook University, Stony Brook, New York 11794. Electronic address: nicole.sampson@stonybrook.edu.
Cornell University · USStony Brook University · USCenter for Infectious Disease Research · US

Funding

Environmental Cues and Responses in TuberculosisR01AI067027 · NIAID · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2006 to 2015
$4.0M
CHOLESTEROL OXIDASE LOOP RESIDUES &CATALYSISR01HL053306 · NHLBI · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S · 2001 to 2009
$2.6M
Acquisition of a Thermo Scientific Orbitrap XL Hybrid FT Mass SpectrometerS10RR025072 · NCRR · STATE UNIVERSITY NEW YORK STONY BROOK · PI IDEN, CHARLES R · 2008 to 2008
$851k
Steroid Hormone Biosynthesis by M.tbR21AI092455 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S · 2011 to 2012
$425k
MALDI-TOF SPECTROM: PROTEIN: INHIBIT FATTY ACID BIOSYNTHESIS IN M TUBERCULOSISS10RR021008 · NCRR · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S. · 2005 to 2005
$270k
NCRR NIH HHS S10 RR021008NCRR NIH HHS S10RR021008NCRR NIH HHS S10 RR025072NCRR NIH HHS S10RR025072NHLBI NIH HHS R01 HL053306NHLBI NIH HHS R01HL53306NIAID NIH HHS R01 AI067027NIAID NIH HHS R01AI067027NIAID NIH HHS R21 AI092455NIAID NIH HHS R21AI092455
6 · The paper itself

Abstract

Mycobacterium tuberculosis, the bacterium that causes tuberculosis, imports and metabolizes host cholesterol during infection. This ability is important in the chronic phase of infection. Here we investigate the role of the intracellular growth operon (igr), which has previously been identified as having a cholesterol-sensitive phenotype in vitro and which is important for intracellular growth of the mycobacteria. We have employed isotopically labeled low density lipoproteins containing either [1,7,15,22,26-(14)C]cholesterol or [1,7,15,22,26-(13)C]cholesterol and high resolution LC/MS as tools to profile the cholesterol-derived metabolome of an igr operon-disrupted mutant (Δigr) of M. tuberculosis. A partially metabolized cholesterol species accumulated in the Δigr knock-out strain that was absent in the complemented and parental wild-type strains. Structural elucidation by multidimensional 1H and 13C NMR spectroscopy revealed the accumulated metabolite to be methyl 1β-(2'-propanoate)-3aα-H-4α-(3'-propanoic acid)-7aβ-methylhexahydro-5-indanone. Heterologously expressed and purified FadE28-FadE29, an acyl-CoA dehydrogenase encoded by the igr operon, catalyzes the dehydrogenation of 2'-propanoyl-CoA ester side chains in substrates with structures analogous to the characterized metabolite. Based on the structure of the isolated metabolite, enzyme activity, and bioinformatic annotations, we assign the primary function of the igr operon to be degradation of the 2'-propanoate side chain. Therefore, the igr operon is necessary to completely metabolize the side chain of cholesterol metabolites.

Indexed as

Acyl-CoA DehydrogenaseCatalysisCholesterolCholesterol, LDLGene Expression Regulation, BacterialHep G2 CellsHumansIsotopesLipidsMutationMycobacterium tuberculosisOperonPhenotypeSteroidsTuberculosisAcyl-CoA DehydrogenaseCholesterolCholesterol, LDLIsotopesLipidsSteroids

Identifiers

PMID22045806
PMCPMC3243565
OpenAlexW1972251269

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.