Evidence map›Paper›PMID 22045295›Full record

ArticleEuropean journal of human genetics : EJHG2012

Unique and atypical deletions in Prader-Willi syndrome reveal distinct phenotypes.

Soo-Jeong Kim, Jennifer L Miller, Paul J Kuipers, Jennifer Ruth German, Arthur L Beaudet, Trilochan Sahoo, Daniel J Driscoll

Abstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
  7. Article
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  10. Review
  11. Article
  12. Article
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  14. Article
  15. Review
  16. Article
  17. Review
  18. Hypogonadism in Patients with Prader Willi Syndrome: A Narrative Review.International journal of molecular sciences · 2021
    Review
  19. Epigenetics in Prader-Willi Syndrome.Frontiers in genetics · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Soo-Jeong KimDepartment of Psychiatry, University of Florida, Gainesville, FL, USA.
Jennifer L Miller
Paul J Kuipers
Jennifer Ruth German
Arthur L Beaudet
Trilochan Sahoo
Daniel J Driscoll

Funding

UF CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR029890 · NCRR · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2009 to 2011
$14.4M
Training and Career Development ComponentU54HD061222 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI PERCY, ALAN KENNETH · 2009 to 2019
$12.4M
UF Clinical and Translational Science AwardUL1TR000064 · NCATS · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2012 to 2014
$12.2M
Human neurobehavioral phenotypes associates with the extended PWS/AS domainR01HD037283 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L. · 1999 to 2014
$8.4M
RARE DISEASE CRC FOR NEW THERAPIES AND NEW DIAGNOSTICSU54RR019478 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L. · 2003 to 2008
$7.3M
Neuroanatomic Studies in Prader-Willi Syndrome and Early-onset ObesityK23DK081203 · NIDDK · UNIVERSITY OF FLORIDA · PI MILLER, JENNIFER L · 2008 to 2012
$852k
Genetic Dissection of Restricted Repetitive Behavior (RRB)K23MH082883 · NIMH · UNIVERSITY OF FLORIDA · PI KIM, SOO-JEONG · 2009 to 2012
$718k
Genetic study of Restricted Repetitive Behavior in Autism Spectrum DisordersR03MH083673 · NIMH · UNIVERSITY OF FLORIDA · PI KIM, SOO-JEONG · 2008 to 2009
$146k
NCATS NIH HHS UL1 TR000064NCRR NIH HHS 1UL 1RR029890NCRR NIH HHS RR019478NCRR NIH HHS U54 RR019478NICHD NIH HHS R01 HD037283NICHD NIH HHS U54 HD061222NIDDK NIH HHS K23 DK081203NIMH NIH HHS K23 MH082883NIMH NIH HHS K23MH082883NIMH NIH HHS R03 MH083673NIMH NIH HHS R03MH083673
6 · The paper itself

Abstract

Prader-Willi syndrome (PWS) is a multisystem, contiguous gene disorder caused by an absence of paternally expressed genes within the 15q11.2-q13 region via one of the three main genetic mechanisms: deletion of the paternally inherited 15q11.2-q13 region, maternal uniparental disomy and imprinting defect. The deletion class is typically subdivided into Type 1 and Type 2 based on their proximal breakpoints (BP1-BP3 and BP2-BP3, respectively). Despite PWS being a well-characterized genetic disorder the role of the specific genes contributing to various aspects of the phenotype are not well understood. Methylation-specific multiplex ligation-dependent probe amplification (MS-MLPA) is a recently developed technique that detects copy number changes and aberrant DNA methylation. In this study, we initially applied MS-MLPA to elucidate the deletion subtypes of 88 subjects. In our cohort, 32 had a Type 1 and 49 had a Type 2 deletion. The remaining seven subjects had unique or atypical deletions that were either smaller (n=5) or larger (n=2) than typically described and were further characterized by array-based comparative genome hybridization. In two subjects both the PWS region (15q11.2) and the newly described 15q13.3 microdeletion syndrome region were deleted. The subjects with a unique or an atypical deletion revealed distinct phenotypic features. In conclusion, unique or atypical deletions were found in ∼8% of the deletion subjects with PWS in our cohort. These novel deletions provide further insight into the potential role of several of the genes within the 15q11.2 and the 15q13.3 regions.

Indexed as

Chromosome DeletionPhenotypeAdolescentAdultChildChild, PreschoolChromosomes, Human, Pair 15Cohort StudiesDNA Copy Number VariationsDNA MethylationFemaleGene OrderHumansInfantMalePrader-Willi Syndrome

Identifiers

PMID22045295
PMCPMC3283188

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.