Evidence map›Paper›PMID 22042774›Full record

ArticleHuman molecular genetics2012

Rare missense variants in CHRNB4 are associated with reduced risk of nicotine dependence.

Gabe Haller, Todd Druley, Francesco L Vallania, Robi D Mitra, Ping Li, Gustav Akk, Joe Henry Steinbach, Naomi Breslau, Eric Johnson, Dorothy Hatsukami and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 4 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 4 syntheses or guidelines pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Deep Sequencing of Three Loci Implicated in Large-Scale Genome-Wide Association Study Smoking Meta-Analyses.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2016
    Pooled it
  4. Pooled it
  5. Transcriptomic Analysis of the Human Habenula in Schizophrenia.The American journal of psychiatry · 2025
    Article
  6. Article
  7. The Value of Biosamples in Smoking Cessation Trials: A Review of Genetic, Metabolomic, and Epigenetic Findings.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2018
    Review
  8. Review
  9. Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2017
    Article
  10. Examination of the Involvement of Cholinergic-Associated Genes in Nicotine Behaviors in European and African Americans.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2017
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Role of β4* Nicotinic Acetylcholine Receptors in the Habenulo-Interpeduncular Pathway in Nicotine Reinforcement in Mice.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2016
    Article
  16. Review
  17. Review
  18. Article
  19. Nicotine withdrawal.Current topics in behavioral neurosciences · 2015
    Review
  20. Genetics of complex traits in psychiatry.Biological psychiatry · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Gabe HallerDepartment of Psychiatry, Washington University, St Louis, MO 63110, USA.
Todd Druley
Francesco L Vallania
Robi D Mitra
Ping Li
Gustav Akk
Joe Henry Steinbach
Naomi Breslau
Eric Johnson
Dorothy Hatsukami
Jerry Stitzel
Laura J Bierut
Alison M Goate
Washington University in St. Louis · USMichigan State University · USRTI International · USUniversity of Colorado Boulder · USUniversity of Minnesota · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
Washington University Institute of Clinical and Translational Sciences (UL1)UL1RR024992 · NCRR · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2007 to 2011
$45.4M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
Aceytylcholine Receptor FunctionR01NS022356 · NINDS · WASHINGTON UNIVERSITY · PI STEINBACH, JOSEPH H. · 1985 to 2013
$3.8M
Function of the CHRNA5 D398N SNP: implications for addiction and lung cancer risR21DA026918 · NIDA · UNIVERSITY OF COLORADO · PI STITZEL, JERRY A · 2009 to 2010
$917k
A Novel sequencing-based approach to discovering rare genetic factors for ALL.K08CA140720 · NCI · WASHINGTON UNIVERSITY · PI DRULEY, TODD E · 2010 to 2014
$744k
NCI NIH HHS K08 CA140720NCI NIH HHS P01 CA089392NCI NIH HHS P01 CA89392NCI NIH HHS P30 CA091842NCRR NIH HHS UL1 RR024992NIDA NIH HHS R21 DA026918NIDA NIH HHS R21 DA26918NINDS NIH HHS R01 NS022356PHS HHS HHSN271200477451C
6 · The paper itself

Abstract

Genome-wide association studies have identified common variation in the CHRNA5-CHRNA3-CHRNB4 and CHRNA6-CHRNB3 gene clusters that contribute to nicotine dependence. However, the role of rare variation in risk for nicotine dependence in these nicotinic receptor genes has not been studied. We undertook pooled sequencing of the coding regions and flanking sequence of the CHRNA5, CHRNA3, CHRNB4, CHRNA6 and CHRNB3 genes in African American and European American nicotine-dependent smokers and smokers without symptoms of dependence. Carrier status of individuals harboring rare missense variants at conserved sites in each of these genes was then compared in cases and controls to test for an association with nicotine dependence. Missense variants at conserved residues in CHRNB4 are associated with lower risk for nicotine dependence in African Americans and European Americans (AA P = 0.0025, odds-ratio (OR) = 0.31, 95% confidence-interval (CI) = 0.31-0.72; EA P = 0.023, OR = 0.69, 95% CI = 0.50-0.95). Furthermore, these individuals were found to smoke fewer cigarettes per day than non-carriers (AA P = 6.6 × 10(-5), EA P = 0.021). Given the possibility of stochastic differences in rare allele frequencies between groups replication of this association is necessary to confirm these findings. The functional effects of the two CHRNB4 variants contributing most to this association (T375I and T91I) and a missense variant in CHRNA3 (R37H) in strong linkage disequilibrium with T91I were examined in vitro. The minor allele of each polymorphism increased cellular response to nicotine (T375I P = 0.01, T91I P = 0.02, R37H P = 0.003), but the largest effect on in vitro receptor activity was seen in the presence of both CHRNB4 T91I and CHRNA3 R37H (P = 2 × 10(-6)).

Indexed as

Polymorphism, Single NucleotideAdultBlack or African AmericanFemaleHEK293 CellsHumansMaleNerve Tissue ProteinsReceptors, NicotinicRiskTobacco Use DisorderWhite PeopleCHRNB4 protein, humanNerve Tissue ProteinsReceptors, Nicotinic

Identifiers

PMID22042774
PMCPMC3259016
OpenAlexW2151800529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.