Evidence map›Paper›PMID 22041938›Full record

ArticleThe Journal of membrane biology2011

Mechanistic insight into the h(2)o/d (2)o isotope effect in the proton transport of the influenza virus m2 protein.

Huan-Xiang Zhou

Open access · greenAbstract read
In one paragraph

Article in The Journal of membrane biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Theoretical frameworks for multiscale modeling and simulation.Current opinion in structural biology · 2014
    Review
  3. Philosophy of voltage-gated proton channels.Journal of the Royal Society, Interface · 2014
    Review
  4. Article
  5. Chemical science · 2013
    Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Huan-Xiang ZhouDepartment of Physics and Institute of Molecular Biophysics, Florida State University, Tallahassee, USA. hzhou4@fsu.edu
Florida State University · US

Funding

DYNAMIC AND STRUCTURAL ELUCIDATION OF GRAMICIDIN A'R01AI023007 · NIAID · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 1987 to 2014
$5.1M
THEORY OF PROTEIN/PROTEIN ASSOCIATIONR01GM058187 · NIGMS · FLORIDA STATE UNIVERSITY · PI ZHOU, HUAN-XIANG · 1998 to 2016
$3.7M
NIAID NIH HHS AI23007NIAID NIH HHS R01 AI023007NIGMS NIH HHS GM58187NIGMS NIH HHS R01 GM058187
6 · The paper itself

Abstract

The M2 proton channel is essential for the replication of the flu virus and is a known drug target. The functional mechanism of channel activation and conductance is key to both the basic biology of viral replication and the design of drugs that can withstand mutations. A quantitative model was previously developed for calculating the rate of proton transport through the M2 channel. The permeant proton was assumed to diffuse to the pore, obligatorily bind to the His37 tetrad, and then dissociate and be released to either side of the tetrad. Here the model is used to calculate the effect of a change in solvent from H(2)O to D(2)O on the rate of proton transport. The solvent substitution affects two parameters in the model: the proton diffusion constant and the pK (a) for proton binding to the His37 tetrad. When the known effects on these two parameters are included, the deuterium isotope effect calculated from the model is in quantitatively agreement with experimental results. This strict test of the theoretical model provides strong support for the hypothesis that the permeant proton obligatorily binds to and then unbinds from the His37 tetrad. This putatively essential role of the His37 tetrad in the functional mechanism of the M2 channel makes it a promising target for designing mutation-tolerant drugs.

Indexed as

ProtonsViral Matrix ProteinsAntiviral AgentsDeuterium OxideDrug DesignHistidineHumansHydrogen-Ion ConcentrationInfluenza A virusInfluenza, HumanIon TransportModels, MolecularMolecular Targeted TherapyProtein Structure, TertiaryViroporin ProteinsWaterAntiviral AgentsDeuterium OxideHistidineM2 protein, Influenza A virusProtonsViral Matrix ProteinsViroporin ProteinsWater

Identifiers

PMID22041938
PMCPMC3237009
OpenAlexW2010983064

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.