Evidence map›Paper›PMID 22041023›Full record

ArticleDNA repair2012

In vitro repair of DNA hairpins containing various numbers of CAG/CTG trinucleotide repeats.

Tianyi Zhang, Jian Huang, Liya Gu, Guo-Min Li

Abstract read
In one paragraph

Article in DNA repair, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Review
  3. DNA Mismatch Repair and its Role in Huntington's Disease.Journal of Huntington's disease · 2021
    Review
  4. HDAC3 deacetylates the DNA mismatch repair factor MutSβ to stimulate triplet repeat expansions.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. DNA triplet repeat expansion and mismatch repair.Annual review of biochemistry · 2015
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Repeat instability during DNA repair: Insights from model systems.Critical reviews in biochemistry and molecular biology
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tianyi ZhangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, Hubei, China.
Jian Huang
Liya Gu
Guo-Min Li

Funding

DNA Mismatch Repair Deficiency and Leukemia RelapseR01CA104333 · NCI · UNIVERSITY OF KENTUCKY · PI GU, LIYA · 2005 to 2010
$1.3M
DNA repair mechanisms in trinucleotide repeat instabilityR01GM089684 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LI, GUO-MIN · 2010 to 2013
$1.2M
NCI NIH HHS CA104333NCI NIH HHS R01 CA104333NIGMS NIH HHS GM089684NIGMS NIH HHS R01 GM089684
6 · The paper itself

Abstract

Expansion of CAG/CTG trinucleotide repeats (TNRs) in humans is associated with a number of neurological and neurodegenerative disorders including Huntington's disease. Increasing evidence suggests that formation of a stable DNA hairpin within CAG/CTG repeats during DNA metabolism leads to TNR instability. However, the molecular mechanism by which cells recognize and repair CAG/CTG hairpins is largely unknown. Recent studies have identified a novel DNA repair pathway specifically removing (CAG)(n)/(CTG)(n) hairpins, which is considered a major mechanism responsible for TNR instability. The hairpin repair (HPR) system targets the repeat tracts for incisions in the nicked strand in an error-free manner. To determine the substrate spectrum of the HPR system and its ability to process smaller hairpins, which may be the intermediates for CAG/CTG expansions, we constructed a series of CAG/CTG hairpin heteroduplexes containing different numbers of repeats (from 5 to 25) and examined their repair in human nuclear extracts. We show here that although repair efficiencies differ slightly among these substrates, removal of the individual hairpin structures all involve endonucleolytic incisions within the repeat tracts in the nicked DNA strand. Analysis of the repair intermediates defined specific incision sites for each substrate, which were all located within the repeat regions. Mismatch repair proteins are not required for, nor do they inhibit, the processing of smaller hairpin structures. These results suggest that the HPR system ensures CAG/CTG stability primarily by removing various sizes of (CAG)(n)/(CTG)(n) hairpin structures during DNA metabolism.

Indexed as

DNA RepairBase SequenceCell NucleusHeLa CellsHumansInverted Repeat SequencesMolecular Sequence DataMutS DNA Mismatch-Binding ProteinTrinucleotide RepeatsMutS DNA Mismatch-Binding Protein

Identifiers

PMID22041023
PMCPMC3356785

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.