Evidence map›Paper›PMID 22040603›Full record

ArticleBiochemistry2011

Biosynthesis and antimicrobial evaluation of backbone-cyclized α-defensins.

Angie E Garcia, Kenneth P Tai, Shadakshara S Puttamadappa, Alexander Shekhtman, Andre J Ouellette, Julio A Camarero

Abstract readComparative Study
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Biological synthesis of circular polypeptides.The Journal of biological chemistry · 2012
    Review
  11. Peptide bicycles that inhibit the Grb2 SH2 domain.Chembiochem : a European journal of chemical biology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Angie E GarciaDepartment of Pharmacology and Pharmaceutical Sciences, University of Southern California, Los Angeles, Calofornia 90033, USA.
Kenneth P Tai
Shadakshara S Puttamadappa
Alexander Shekhtman
Andre J Ouellette
Julio A Camarero
Albany State University · USUniversity of Southern California · US

Funding

PEPTIDE EFFECTORS OF ENTERIC HOST DEFENSER01DK044632 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OUELLETTE, ANDRE J. · 1993 to 2010
$2.8M
Real Time (RT) In-cell NMR technology to study protein interactions in live cellsR01GM085006 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI SHEKHTMAN, ALEXANDER · 2010 to 2021
$2.4M
Cell-based screening and selection of cyclotide-based capture reagents for proteiR01GM090323 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CAMARERO, JULIO A · 2009 to 2013
$2.0M
STUDIES OF ALPHA-DEFENSINS IN PRIMATE INNATE IMMUNITYR01AI059346 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OUELLETTE, ANDRE J. · 2006 to 2010
$1.7M
PEPTIDE EFFECTORS OF ENTERIC HOST DEFENSER55DK044632 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI OUELLETTE, ANDRE J. · 1992 to 1992
–
NIAID NIH HHS AI059346NIAID NIH HHS R01 AI059346NIDDK NIH HHS DK044632NIDDK NIH HHS R01 DK044632NIGMS NIH HHS 5R01GM085006-02NIGMS NIH HHS R01 GM085006NIGMS NIH HHS R01 GM090323NIGMS NIH HHS R01-GM090323
6 · The paper itself

Abstract

Defensins are antimicrobial peptides that are important in the innate immune defense of mammals. Upon stimulation by bacterial antigens, enteric α-defensins are secreted into the intestinal lumen where they have potent microbicidal activities. Cryptdin-4 (Crp4) is an α-defensin expressed in Paneth cells of the mouse small intestine and the most bactericidal of the known cryptdin isoforms. The structure of Crp4 consists of a triple-stranded antiparallel β-sheet but lacks three amino acids between the fourth and fifth cysteine residues, making them distinct from other α-defensins. The structure also reveals that the α-amino and C-terminal carboxylic groups are in the proximity of each other (d ≈ 3 Å) in the folded structure. We present here the biosynthesis of backbone-cyclized Crp4 using a modified protein splicing unit or intein. Our data show that cyclized Crp4 can be biosynthesized by using this approach both in vitro and in vivo, although the expression yield was significantly lower when the protein was produced inside the cell. The resulting cyclic defensins retained the native α-defensin fold and showed equivalent or better microbicidal activities against several Gram-positive and Gram-negative bacteria when compared to native Crp4. No detectable hemolytic activity against human red blood cells was observed for either native Crp4 or its cyclized variants. Moreover, both forms of Crp4 also showed high stability to degradation when incubated with human serum. Altogether, these results indicate the potential for backbone-cyclized defensins in the development of novel peptide-based antimicrobial compounds.

Indexed as

Protein Conformationalpha-DefensinsAmino Acid SequenceAnimalsAnti-Bacterial AgentsGram-Positive BacteriaHemolysisHumansMiceMolecular Sequence DataPaneth CellsPeptides, CyclicProtein FoldingProtein Stabilityalpha-DefensinsAnti-Bacterial Agentscryptdin 4, mousePeptides, Cyclic

Identifiers

PMID22040603
PMCPMC3236816
OpenAlexW2013204047

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.