Evidence map›Paper›PMID 22039762›Full record

ArticleBiochemistry2011

Specific labeling of threonine methyl groups for NMR studies of protein-nucleic acid complexes.

Kaustubh Sinha, Linda Jen-Jacobson, Gordon S Rule

Abstract readEvaluation Study
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Bacterial production of site specificJournal of biomolecular NMR · 2017
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Practical aspects of NMR signal assignment in larger and challenging proteins.Progress in nuclear magnetic resonance spectroscopy · 2014
    Review
  8. Review
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Kaustubh SinhaDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15213, United States.
Linda Jen-Jacobson
Gordon S Rule
University of Pittsburgh · USCarnegie Mellon University · US

Funding

Sequence Specific DNA Protein InteractionsR37GM029207 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JEN-JACOBSON, LINDA · 2001 to 2010
$4.1M
SEQUENCE-SPECIFIC DNA-PROTEIN INTERACTIONSR01GM029207 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JEN-JACOBSON, LINDA · 1985 to 2018
$1.6M
NIGMS NIH HHS 5R37-GM029207NIGMS NIH HHS R01 GM029207NIGMS NIH HHS R37 GM029207
6 · The paper itself

Abstract

Specific (13)C labeling of Thr methyl groups has been accomplished via the growth of a standard laboratory strain of Escherichia coli on [2-(13)C]glycerol in the presence of deuterated isoketovalerate, Ile, and Ala. Diversion of the label from the Thr biosynthetic pathway is suppressed by including Lys, Met, and Ile in the growth medium. This method complements the repertoire of methyl labeling schemes for NMR structural and dynamic studies of proteins and is particularly useful for the study of nucleic acid binding proteins because of the high propensity of Thr residues at protein-DNA and -RNA interfaces.

Indexed as

DNA, BacterialEscherichia coliEscherichia coli ProteinsMagnetic Resonance SpectroscopyProtein BindingRNA, BacterialStaining and LabelingThreonineDNA, BacterialEscherichia coli ProteinsRNA, BacterialThreonine

Identifiers

PMID22039762
PMCPMC3222749
OpenAlexW2035340194

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.