ArticleDatabase : the journal of biological databases and curation2011
CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses.
Article in Database : the journal of biological databases and curation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- Physical models reveal indirect reader protein interactions that facilitate epigenetic crosstalk.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- PreDigs: A Database of Context-specific Cell Type Markers and Precise Cell Subtypes for Digestive Cell Annotation.Genomics, proteomics & bioinformatics · 2025Article
- Physical modeling of nucleosome clustering in euchromatin resulting from interactions between epigenetic reader proteins.Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- Exosomal Proteomics: Unveiling Novel Insights into Lung Cancer.Aging and disease · 2024Review
- AgingReG: a curated database of aging regulatory relationships in humans.Database : the journal of biological databases and curation · 2023Article
- Cell Taxonomy: a curated repository of cell types with multifaceted characterization.Nucleic acids research · 2023Article
- TF-Marker: a comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human.Nucleic acids research · 2022Article
- Understanding extracellular vesicle and nanoparticle heterogeneity: Novel methods and considerations.Proteomics · 2021Review
- Using Cell Type-Specific Genes to Identify Cell-Type Transitions Between DifferentFrontiers in cell and developmental biology · 2021Article
- Human Cell Atlas and cell-type authentication for regenerative medicine.Experimental & molecular medicine · 2020Review
- Self-renewing endometrial epithelial organoids of the human uterus.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- CellMarker: a manually curated resource of cell markers in human and mouse.Nucleic acids research · 2019Article
- Toward mapping the human body at a cellular resolution.Molecular biology of the cell · 2018Review
- Cell type discovery and representation in the era of high-content single cell phenotyping.BMC bioinformatics · 2017Article
- Genomic and molecular control of cell type and cell type conversions.Cell regeneration (London, England) · 2017Review
- First Proposal of Minimum Information About a Cellular Assay for Regenerative Medicine.Stem cells translational medicine · 2016Article
- The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.Journal of biomedical semantics · 2016Article
- Databases and collaboration require standards for human stem cell research.Drug discovery today · 2015Review
- CellFinder: a cell data repository.Nucleic acids research · 2014Article
- CELDA -- an ontology for the comprehensive representation of cells in complex systems.BMC bioinformatics · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
CELLPEDIA is a repository database for current knowledge about human cells. It contains various types of information, such as cell morphologies, gene expression and literature references. The major role of CELLPEDIA is to provide a digital dictionary of human cells for the biomedical field, including support for the characterization of artificially generated cells in regenerative medicine. CELLPEDIA features (i) its own cell classification scheme, in which whole human cells are classified by their physical locations in addition to conventional taxonomy; and (ii) cell differentiation pathways compiled from biomedical textbooks and journal papers. Currently, human differentiated cells and stem cells are classified into 2260 and 66 cell taxonomy keys, respectively, from which 934 parent-child relationships reported in cell differentiation or transdifferentiation pathways are retrievable. As far as we know, this is the first attempt to develop a digital cell bank to function as a public resource for the accumulation of current knowledge about human cells. The CELLPEDIA homepage is freely accessible except for the data submission pages that require authentication (please send a password request to cell-info@cbrc.jp). Database URL: http://cellpedia.cbrc.jp/
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.