Evidence map›Paper›PMID 22039155›Full record

ArticleNucleic acids research2012

Highly parallel oligonucleotide purification and functionalization using reversible chemistry.

Kerri T York, Ryan C Smith, Rob Yang, Peter C Melnyk, Melissa M Wiley, Casey M Turk, Mostafa Ronaghi, Kevin L Gunderson, Frank J Steemers

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kerri T YorkIllumina, Inc., Advanced Research Group, San Diego, CA 92121, USA.
Ryan C Smith
Rob Yang
Peter C Melnyk
Melissa M Wiley
Casey M Turk
Mostafa Ronaghi
Kevin L Gunderson
Frank J Steemers

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have developed a cost-effective, highly parallel method for purification and functionalization of 5'-labeled oligonucleotides. The approach is based on 5'-hexa-His phase tag purification, followed by exchange of the hexa-His tag for a functional group using reversible reaction chemistry. These methods are suitable for large-scale (micromole to millimole) production of oligonucleotides and are amenable to highly parallel processing of many oligonucleotides individually or in high complexity pools. Examples of the preparation of 5'-biotin, 95-mer, oligonucleotide pools of >40K complexity at micromole scale are shown. These pools are prepared in up to ~16% yield and 90-99% purity. Approaches for using this method in other applications are also discussed.

Indexed as

BiotinylationChemistry Techniques, SyntheticChromatography, LiquidHistidineOligonucleotidesOligopeptidesHis-His-His-His-His-HisHistidineOligonucleotidesOligopeptides

Identifiers

PMID22039155
PMCPMC3245951

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.