ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012
Development and characterization of genomic and expressed SSRs for levant cotton (Gossypium herbaceum L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 42 citations in OpenAlex.
- Genomic and Cytogenetic Analysis of Synthetic Polyploids between Diploid and Tetraploid Cotton (Plants (Basel, Switzerland) · 2023Article
- Induction of polyploidy through colchicine in cotton (Journal of genetics · 2021Article
- Genome-wide development of miRNA-based SSR markers in Cleistogenes songorica and analysis of their transferability to Gramineae/non-Gramineae species.Journal of applied genetics · 2020Article
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- Development of polymorphic EST-SSR markers and characterization of the autotetraploid genome of sainfoin (PeerJ · 2019Article
- Genotyping-by-Sequencing ofEvolutionary bioinformatics online · 2019Article
- Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing.Scientific reports · 2016Article
- Construction of a high-density linkage map and mapping quantitative trait loci for somatic embryogenesis using leaf petioles as explants in upland cotton (Gossypium hirsutum L.).Plant cell reports · 2015Article
- Molecular characterization of the Gossypium Diversity Reference Set of the US National Cotton Germplasm Collection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Article
- Exploring genetic variability within lentil (Lens culinaris Medik.) and across related legumes using a newly developed set of microsatellite markers.Molecular biology reports · 2014Article
- Expanding the repertoire of microsatellite markers for polymorphism studies in Indian accessions of mung bean (Vigna radiata L. Wilczek).Molecular biology reports · 2014Article
- Use of EST-SSR markers for evaluating genetic diversity and fingerprinting celery (Apium graveolens L.) cultivars.Molecules (Basel, Switzerland) · 2014Article
- Isolation and characterization of microsatellite markers and analysis of genetic diversity in Chinese jujube (Ziziphus jujuba Mill.).PloS one · 2014Article
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13 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Four microsatellite-enriched genomic libraries for CA(15), GA(15), AAG(8) and ATG(8) repeats and transcriptome sequences of five cDNA libraries of Gossypium herbaceum were explored to develop simple sequence repeat (SSR) markers. A total of 428 unique clones from repeat enriched genomic libraries were mined for 584 genomic SSRs (gSSRs). In addition, 99,780 unigenes from transcriptome sequencing were explored for 8,900 SSR containing sequences with 12,471 expressed SSRs. The present study adds 1,970 expressed SSRs and 263 gSSRs to the public domain for the use of genetic studies of cotton. When 150 gSSRs and 50 expressed SSRs were tested on a panel of four species of cotton, 68 gSSRs and 12 expressed SSRs revealed polymorphism. These 200 SSRs were further deployed on 15 genotypes of levant cotton for the genetic diversity assessment. This is the first report on the successful use of repeat enriched genomic library and expressed sequence database for microsatellite markers development in G. herbaceum.
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