Evidence map›Paper›PMID 22037779›Full record

ArticleBreast cancer research and treatment2012

Life stage differences in mammary gland gene expression profile in non-human primates.

Petra Stute, Sonja Sielker, Charles E Wood, Thomas C Register, Cynthia J Lees, Fitriya N Dewi, J Koudy Williams, Janice D Wagner, Ulrich Stefenelli, J Mark Cline

Open access · bronzeAbstract read
In one paragraph

Article in Breast cancer research and treatment, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 33 citations in OpenAlex.

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  5. Breast-Specific Molecular Clocks Comprised ofCancer prevention research (Philadelphia, Pa.) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Petra StuteDepartment of Gynecologic Endocrinology and Reproductive Medicine, University Women's Hospital, Berne, Switzerland. petra.stute@insel.ch
Sonja Sielker
Charles E Wood
Thomas C Register
Cynthia J Lees
Fitriya N Dewi
J Koudy Williams
Janice D Wagner
Ulrich Stefenelli
J Mark Cline
Wake Forest University · USUniversity Hospital of Bern · CH

Funding

WFUSM Macaca fascicularis SPF Breeding ColonyP40RR021380 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WAGNER, JANICE D. · 2007 to 2011
$5.6M
SOY AND ESTROGEN INTERACTIONS IN THE BREASTR01AT000639 · NCCIH · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI CLINE, J. MARK · 2000 to 2009
$4.7M
PROGESTOGENS VS PHYTOESTROGENS-- AN ADJUNCT TO ERTR01AG017864 · NIA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WILLIAMS, JAMES KOUDY · 2000 to 2004
$2.3M
VASCULAR GENE EXPRESSION IN AGING WOMENR03AG018170 · NIA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI REGISTER, THOMAS COSTIN · 2000 to 2000
$73k
NCCIH NIH HHS R01 AT000639NCCIH NIH HHS R01 AT00639-06NCRR NIH HHS P40 RR 021380NCRR NIH HHS P40 RR021380NIA NIH HHS R01 AG017864NIA NIH HHS R01AG017864NIA NIH HHS R03 AG018170NIA NIH HHS R03 AG18170
6 · The paper itself

Abstract

Breast cancer (BC) is the most common malignancy of women in the developed world. To better understand its pathogenesis, knowledge of normal breast development is crucial, as BC is the result of disregulation of physiologic processes. The aim of this study was to investigate the impact of reproductive life stages on the transcriptional profile of the mammary gland in a primate model. Comparative transcriptomic analyses were carried out using breast tissues from 28 female cynomolgus macaques (Macaca fascicularis) at the following life stages: prepubertal (n = 5), adolescent (n = 4), adult luteal (n = 5), pregnant (n = 6), lactating (n = 3), and postmenopausal (n = 5). Mammary gland RNA was hybridized to Affymetrix GeneChip(®) Rhesus Macaque Genome Arrays. Differential gene expression was analyzed using ANOVA and cluster analysis. Hierarchical cluster analysis revealed distinct separation of life stage groups. More than 2,225 differentially expressed mRNAs were identified. Gene families or pathways that changed across life stages included those related to estrogen and androgen (ESR1, PGR, TFF1, GREB1, AR, 17HSDB2, 17HSDB7, STS, HSD11B1, AKR1C4), prolactin (PRLR, ELF5, STAT5, CSN1S1), insulin-like growth factor signaling (IGF1, IGFBP1, IGFBP5), extracellular matrix (POSTN, TGFB1, COL5A2, COL12A1, FOXC1, LAMC1, PDGFRA, TGFB2), and differentiation (CD24, CD29, CD44, CD61, ALDH1, BRCA1, FOXA1, POSTN, DICER1, LIG4, KLF4, NOTCH2, RIF1, BMPR1A, TGFB2). Pregnancy and lactation displayed distinct patterns of gene expression. ESR1 and IGF1 were significantly higher in the adolescent compared to the adult animals, whereas differentiation pathways were overrepresented in adult animals and pregnancy-associated life stages. Few individual genes were distinctly different in postmenopausal animals. Our data demonstrate characteristic patterns of gene expression during breast development. Several of the pathways activated during pubertal development have been implicated in cancer development and metastasis, supporting the idea that other developmental markers may have application as biomarkers for BC.

Indexed as

TranscriptomeAge FactorsAnimalsBreast NeoplasmsExtracellular MatrixFemaleGene Expression ProfilingGene Expression RegulationGonadal Steroid HormonesKruppel-Like Factor 4LactationMacaca fascicularisMammary Glands, AnimalMenopausePregnancyReceptors, SteroidGonadal Steroid HormonesKLF4 protein, humanKruppel-Like Factor 4Receptors, Steroid

Identifiers

PMID22037779
PMCPMC3822905
OpenAlexW2152193434

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.