Evidence map›Paper›PMID 22037666›Full record

ArticleMolecules (Basel, Switzerland)2011

Molecular characterization and tandem mass spectrometry of the lectin extracted from the seeds of Dioclea sclerocarpa Ducke.

Jorge Luis Almeida Correia, Antônia Sâmia Fernandes do Nascimento, João Batista Cajazeiras, Ana Cláudia Silva Gondim, Ronniery Ilario Pereira, Bruno Lopes de Sousa, André Luiz Coelho da Silva, Wanius Garcia, Edson Holanda Teixeira, Kyria Santiago do Nascimento and 4 more

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Jorge Luis Almeida CorreiaLaboratório de Moléculas Biologicamente Ativas (Biomol-Lab), Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Av. Humberto Monte s/n, Bloco 907, Lab. 1075, Campus do Pici, Fortaleza-CE, 60440-970, Brazil.
Antônia Sâmia Fernandes do Nascimento
João Batista Cajazeiras
Ana Cláudia Silva Gondim
Ronniery Ilario Pereira
Bruno Lopes de Sousa
André Luiz Coelho da Silva
Wanius Garcia
Edson Holanda Teixeira
Kyria Santiago do Nascimento
Bruno Anderson Matias da Rocha
Celso Shiniti Nagano
Alexandre Holanda Sampaio
Benildo Sousa Cavada
Universidade Federal do Ceará · BRUniversidade Federal do ABC · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lectin from the seeds of Dioclea sclerocarpa (DSL) was purified in a single step by affinity chromatography on a Sephadex G-50 column. The primary sequence, as determined by tandem mass spectrometry, revealed a protein with 237 amino acids and 81% of identity with ConA. DSL has a molecular mass of 25,606 Da. The β and γ chains weigh 12,873 Da and 12,752 Da, respectively. DSL hemagglutinated rabbit erythrocytes (both native and treated with proteolytic enzymes), showing stability even after one hour of exposure to a specific pH range. The hemagglutinating activity of DSL was optimal between pH 6.0 and 8.0, but was inhibited after incubation with D-galactose and D-glucose. The pure protein possesses a molecular mass of 25 kDa by SDS-PAGE and 25,606 Da by mass spectrometry. The secondary structure content was estimated using the software SELCON3. The results indicate that b-sheet secondary structures are predominant in DSL (approximately 42.3% antiparallel b-sheet and 6.7% parallel b-sheet). In addition to the b-sheet, the predicted secondary structure of DSL features 4.1% a-helices, 15.8% turns and 31.3% other contributions. Upon thermal denaturation, evaluated by measuring changes in ellipticity at 218 nm induced by a temperature increase from 20 °C to 98 °C, DSL displayed cooperative sigmoidal behavior with transition midpoint at 84 °C and permitted the observation of two-state model (native and denatured).

Indexed as

Amino Acid SequenceAnimalsCircular DichroismDiocleaHemagglutinationLectinsMolecular Sequence DataMolecular WeightProtein Structure, SecondaryRabbitsSeedsSequence AlignmentTandem Mass SpectrometryLectins

Identifiers

PMID22037666
PMCPMC6264274
OpenAlexW2037032905

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.